CX300147

Overview
NameCX300147
Unique NameCX300147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LACJO (10 kDa chaperonin OS=Lactobacillus johnsonii GN=groS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            L+P+ DRV +KV + EE   GG++L   +KEKP +G +IAVG G  +  G+  P+S+A G TV + KY+G + K  +G  Y+ LR S+++AV+
Sbjct:    2 LQPIGDRVIVKVKDEEEEKVGGIVLASNAKEKPQMGEIIAVGNGKRNANGDLIPMSVAKGETVFFDKYSGTNLK-YEGEKYLVLRESDLLAVV 93          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LACGA (10 kDa chaperonin OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=groS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 40/93 (43.01%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            L+P+ DRV +KV + EE   GG++L   +KEKP +G +IAVG G  +  G+  P+S+A G TV + KY+G + K  +G  Y+ LR S+++AV+
Sbjct:    2 LQPIGDRVIVKVKDEEEEKVGGIVLASNAKEKPQMGEIIAVGNGKRNANGDLIPMSVAKGETVFFDKYSGTNLK-YEGEKYLVLRESDLLAVV 93          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_CHLL2 (10 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +LKPL DRV +K A AEE T GGL + +  KEKP  G V+AVGPG + + G    + +  G  V+Y KY+G +    +G +Y+ +R S++ A+L
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLFIPDTGKEKPQYGEVVAVGPGKVADNGQLLDMQVTVGKKVLYGKYSGTEV-NVEGEDYLIMRESDIFAIL 94          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DRV I++ E EE TA G++L + +KEKP  G V+AVG G + + G R    +  G+ +++SKYAG + K  DG  Y+ LR S+++AV+
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVK-YDGKEYLILRESDILAVI 93          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH102_RHOPA (10 kDa chaperonin 2 OS=Rhodopseudomonas palustris GN=groS2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 38/95 (40.00%), Postives = 65/95 (68.42%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            + +PL+DRV +K  +AEE TAGG+++ + +KEKPS G ++AVGPG  DE G   P+ +  G+ V++ K++G + K  DG   + ++ S++M V++
Sbjct:    2 NFRPLHDRVVVKRIDAEEKTAGGIIIPDTAKEKPSQGEIVAVGPGGRDEAGKLIPIDLKVGDRVLFGKWSGTEVK-IDGKELLIMKESDIMGVIT 95          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH102_RHILO (10 kDa chaperonin 2 OS=Rhizobium loti GN=groS2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 37/92 (40.22%), Postives = 63/92 (68.48%), Query Frame = 3
Query:   66 KPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +PL+DR+ ++  EAEE TAGG+++ + +KEKP  G VIA+GPG  DE G   PL +  G+ +++ K++G + K  +G + + ++ S+VM V+
Sbjct:    4 RPLHDRILVRRIEAEEKTAGGIIIPDTAKEKPQEGEVIAIGPGARDESGKLTPLDVKAGDRILFGKWSGTEIK-LNGEDLLIMKESDVMGVI 94          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_STRMK (10 kDa chaperonin OS=Stenotrophomonas maltophilia (strain K279a) GN=groS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 41/93 (44.09%), Postives = 66/93 (70.97%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL+DRV +K  EA+E +AGG+++ +++KEK + G V+AVGPG   + GN +  S+  G+ V+Y +YAG+ +K S+G  Y  LR  +V+AV+
Sbjct:    3 IKPLHDRVVVKPIEADEISAGGIVIPDSAKEKSTKGEVVAVGPGKPLDNGNVRAPSLKVGDKVIYGQYAGSSYK-SEGVEYKVLREDDVLAVI 94          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_POLSQ (10 kDa chaperonin OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=groS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +L+PL+DRV IK  + E  TA G+++ +A+ EKP  G ++AVGPG  DE G   PL +  G+ V++ KYAG   K  DG   I +R  ++MAV+
Sbjct:    2 NLRPLHDRVIIKRLDQESKTASGIIIPDAAAEKPDQGEILAVGPGKRDEAGKLNPLDVKVGDRVLFGKYAGQTVK-VDGDELIVMREDDIMAVV 94          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_OCEIH (10 kDa chaperonin OS=Oceanobacillus iheyensis GN=groS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 40/93 (43.01%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DRV I++ E EETTA G++L +++KEKP  G V+AVG G + E G +  L ++ G+ +++SK+AG + K  +GT Y+ LR ++++A++
Sbjct:    2 IKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRV-ENGEKIALEVSEGDRIIFSKFAGTEVK-YEGTEYLILRENDILAII 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_GEOKA (10 kDa chaperonin OS=Geobacillus kaustophilus GN=groS PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DR+ I+V E EE TA G++L + +KEKP  G V+AVG G + + G R    +  G+ +++SKYAG + K  DG  Y+ LR S+++AV+
Sbjct:    1 MKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGAGRVLDNGQRIAPEVEVGDRIIFSKYAGTEVK-YDGKEYLILRESDILAVI 92          
The following BLAST results are available for this feature:
BLAST of CX300147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_LACJO1.739e-1643.0110 kDa chaperonin OS=Lactobacillus johnsonii GN=gr... [more]
CH10_LACGA1.739e-1643.0110 kDa chaperonin OS=Lactobacillus gasseri (strain... [more]
CH10_CHLL21.739e-1642.5510 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH10_BACTR1.739e-1644.0910 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH102_RHOPA1.739e-1640.0010 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH102_RHILO1.739e-1640.2210 kDa chaperonin 2 OS=Rhizobium loti GN=groS2 PE=... [more]
CH10_STRMK2.271e-1644.0910 kDa chaperonin OS=Stenotrophomonas maltophilia ... [more]
CH10_POLSQ2.271e-1643.6210 kDa chaperonin OS=Polynucleobacter sp. (strain ... [more]
CH10_OCEIH2.271e-1643.0110 kDa chaperonin OS=Oceanobacillus iheyensis GN=g... [more]
CH10_GEOKA2.271e-1644.0910 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]

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Properties
Property NameValue
Genbank descriptionC07006G03SK SaltLeaf1 Citrus clementina cDNA clone C07006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300147 ID=CX300147; Name=CX300147; organism=Citrus clementina; type=EST; length=479bp
ATCATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGAT
GAAATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
TGAGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCA
AGGAGAAACCTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTA
GATGAGGAAGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGT
GATGTATTCGAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGCACCA
ACTACATTGCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTG
TCTGTGTTTACTTGAGCGAGGCTTTATATGTATTAGTGAATTGAATTTTA
TGGTTGAGTTGCCTCAAGGCATACGGATTTTGACTGTAATCTTATTTGAA
CATAAAGAATTGCAGCTTGATCAATCGAA
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