CX300147

Overview
NameCX300147
Unique NameCX300147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:638..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.520e-20
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V  VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LEIXX (10 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.520e-20
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DR+ IK  EAE+TTA GL++ + +KEKP  G V AVGPG +D+ GNR PL +A G+ V+YSKY G + K   G +Y+ L A +V+AV+
Sbjct:    5 IKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-FGGQDYLVLSARDVLAVV 96          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.520e-20
Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 335
            +  +KPL DR+F+KV+ AEE TAGG+LL + ++EKP IG V+AVGPG  +++G+R  L +  G+ V+YSKYAG D K S G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLS-GEDYVLLSEKDILA 100          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNP6 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G+D  +Y+ L   +++AV++
Sbjct:    8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVVA 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNE7 (10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 46/98 (46.94%), Postives = 72/98 (73.47%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  + PL DRVF+KVAEAEE TAGG++L + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G+D  +Y+ L   +++AV++
Sbjct:    8 VSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQAPEVKIGDKVLYSKYAGTDIKLGND--DYVLLSEKDILAVVA 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_BEUC1 (10 kDa chaperonin OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=groS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.985e-20
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DR+ +K  EAE+TTA GL++ + +KEKP  G V+A+GPG +D+ GNR P+ +A G+ V+YSKY G + K + G  Y+ L A +V+AV+
Sbjct:    5 IKPLEDRIVVKTLEAEQTTASGLVIPDTAKEKPQEGEVLAIGPGRVDDNGNRVPVDVAVGDVVIYSKYGGTEVKYA-GQEYLILSARDVLAVV 96          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 43/100 (43.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:   45 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            T  +  +KPL +RVF+KV+E+EE TAGG+LL +++KEKP +G V++ GPG  +++G R  + +  G+ V+YSKYAG D K   G  Y+ L   +++A+++
Sbjct:    5 TLSVSTVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIK-LGGDEYVLLAEKDILAIVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 44/97 (45.36%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K   G  ++ L   +++A+++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIK-LGGDEFVLLTEKDILAIVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 45/97 (46.39%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K S    Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLST-DEYVLLSEKDILAVVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.592e-20
Identity = 45/96 (46.88%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVV 102          
The following BLAST results are available for this feature:
BLAST of CX300147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_PROMA1.520e-2048.9810 kDa chaperonin OS=Prochlorococcus marinus GN=gr... [more]
CH10_LEIXX1.520e-2051.6110 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN... [more]
CH10_CYAA51.520e-2048.9410 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5... [more]
CH10_SYNP61.985e-2046.9410 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_SYNE71.985e-2046.9410 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH10_BEUC11.985e-2048.3910 kDa chaperonin OS=Beutenbergia cavernae (strain... [more]
CH10_TRIEI2.592e-2043.0010 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_SYNPX2.592e-2045.3610 kDa chaperonin OS=Synechococcus sp. (strain WH8... [more]
CH10_PROMM2.592e-2046.3910 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM92.592e-2046.8810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC07006G03SK SaltLeaf1 Citrus clementina cDNA clone C07006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300147 ID=CX300147; Name=CX300147; organism=Citrus clementina; type=EST; length=479bp
ATCATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGAT
GAAATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
TGAGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCA
AGGAGAAACCTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTA
GATGAGGAAGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGT
GATGTATTCGAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGCACCA
ACTACATTGCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTG
TCTGTGTTTACTTGAGCGAGGCTTTATATGTATTAGTGAATTGAATTTTA
TGGTTGAGTTGCCTCAAGGCATACGGATTTTGACTGTAATCTTATTTGAA
CATAAAGAATTGCAGCTTGATCAATCGAA
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