CX300147

Overview
NameCX300147
Unique NameCX300147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LISW6 (10 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 44/92 (47.83%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + E G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 43/94 (45.74%), Postives = 67/94 (71.28%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG + E+G    +++  G+TV++SKYAG + K  DG  ++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIK-LDGVEHLVMREDDILAII 94          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_CYAP4 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=groS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 43/98 (43.88%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP +G ++AVGPG  +++G+R+   +  G+ V+YSKYAG D K G++   Y+ L   +++A+++
Sbjct:    8 VSTVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQVGEIVAVGPGKRNDDGSRQEPEVKIGDKVLYSKYAGTDIKLGTE--EYVLLSEKDILAIVA 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH101_RHOBA (10 kDa chaperonin 1 OS=Rhodopirellula baltica GN=groS1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.680e-19
Identity = 46/92 (50.00%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 335
            +L+PL+DRV ++ +EAEETTAGG++L +++KEKP  GTV+AVGPG L + GNR  LS++ G+ V+Y KY G++ +  DG     LR S+++A
Sbjct:    8 NLRPLDDRVVVQPSEAEETTAGGIVLPDSAKEKPQRGTVVAVGPGKLLDSGNRGELSVSVGDVVIYGKYGGSEIE-VDGHEMKILRESDILA 98          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 44/97 (45.36%), Postives = 67/97 (69.07%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 341
            +  LKPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG + K GSD   Y+ L   +++A++
Sbjct:    8 VSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSD--EYVLLAERDILAIV 102          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_MYCVP (10 kDa chaperonin OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 45/96 (46.88%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_MYCPA (10 kDa chaperonin OS=Mycobacterium paratuberculosis GN=groS PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_MYCGI (10 kDa chaperonin OS=Mycobacterium gilvum (strain PYR-GCK) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 45/96 (46.88%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL ++ G+ V+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVSEGDVVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_MYCAV (10 kDa chaperonin OS=Mycobacterium avium GN=groS PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_MYCA1 (10 kDa chaperonin OS=Mycobacterium avium (strain 104) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 46/96 (47.92%), Postives = 69/96 (71.88%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEG-NRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  D++G  R PL ++ G+TV+YSKY G + K  +G  Y+ L A +V+AV+S
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDDDGAKRIPLDVSEGDTVIYSKYGGTEIK-YNGEEYLILSARDVLAVVS 99          
The following BLAST results are available for this feature:
BLAST of CX300147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_LISW61.680e-1947.8310 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH10_DESVM1.680e-1945.7410 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_CYAP41.680e-1943.8810 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH101_RHOBA1.680e-1950.0010 kDa chaperonin 1 OS=Rhodopirellula baltica GN=g... [more]
CH10_SYNJB2.195e-1945.3610 kDa chaperonin OS=Synechococcus sp. GN=groS PE=... [more]
CH10_MYCVP2.195e-1946.8810 kDa chaperonin OS=Mycobacterium vanbaalenii (st... [more]
CH10_MYCPA2.195e-1947.9210 kDa chaperonin OS=Mycobacterium paratuberculosi... [more]
CH10_MYCGI2.195e-1946.8810 kDa chaperonin OS=Mycobacterium gilvum (strain ... [more]
CH10_MYCAV2.195e-1947.9210 kDa chaperonin OS=Mycobacterium avium GN=groS P... [more]
CH10_MYCA12.195e-1947.9210 kDa chaperonin OS=Mycobacterium avium (strain 1... [more]

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Properties
Property NameValue
Genbank descriptionC07006G03SK SaltLeaf1 Citrus clementina cDNA clone C07006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300147 ID=CX300147; Name=CX300147; organism=Citrus clementina; type=EST; length=479bp
ATCATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGAT
GAAATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
TGAGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCA
AGGAGAAACCTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTA
GATGAGGAAGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGT
GATGTATTCGAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGCACCA
ACTACATTGCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTG
TCTGTGTTTACTTGAGCGAGGCTTTATATGTATTAGTGAATTGAATTTTA
TGGTTGAGTTGCCTCAAGGCATACGGATTTTGACTGTAATCTTATTTGAA
CATAAAGAATTGCAGCTTGATCAATCGAA
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