CX300147

Overview
NameCX300147
Unique NameCX300147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_DESDA (10 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 43/93 (46.24%), Postives = 66/93 (70.97%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            LKPLNDRV +K  E EE TAGGL + + +KEKPS G V+AVGPG + + G R  L++  G+ V+++KYAG + K  DG +++ +R  +++A++
Sbjct:    3 LKPLNDRVLVKRLETEEKTAGGLYIPDTAKEKPSKGQVVAVGPGKVGDNGERTALAVKAGDEVLFNKYAGTEVK-LDGVDHLVMREEDILAII 94          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_ARTCA (10 kDa chaperonin OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=groS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 45/93 (48.39%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DR+ ++  EAE+TTA GLL+ ++++EKP  G V+AVGPG   E+GNR P+ +A G+ V+YSKY G + K + GT Y+ L A +V+A++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLLIPDSAQEKPQEGEVVAVGPGRF-EDGNRVPVDVAVGDVVIYSKYGGTEVK-TGGTEYLVLSARDVLAIV 95          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_RENSM (10 kDa chaperonin OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=groS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.866e-19
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DR+ ++  +AE+TTA GL++ +++KEKP  G V+AVGPG +D+ GNR P+ +A G+ V+YSKY G + K + G   + L A +V+A++
Sbjct:    5 IKPLEDRIVVRQLDAEQTTASGLVIPDSAKEKPQEGEVVAVGPGRVDDNGNRVPVDVAVGDVVLYSKYGGTEVK-TGGEELLVLSARDVLAIV 96          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_NOCFA (10 kDa chaperonin OS=Nocardia farcinica GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   60 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            ++KPL D++ ++  EAE TTA GL++ + +KEKP  GTV+AVGPG  DE+G ++ PL +  G+TV+YSKY G + K   G  Y+ L A +V+AV+
Sbjct:    5 NIKPLEDKILVQANEAETTTASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVQEGDTVIYSKYGGTEIK-YQGEEYLILSARDVLAVV 98          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LISMO (10 kDa chaperonin OS=Listeria monocytogenes GN=groS PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LISMH (10 kDa chaperonin OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LISMF (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain F2365) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LISMC (10 kDa chaperonin OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LISIN (10 kDa chaperonin OS=Listeria innocua GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 43/92 (46.74%), Postives = 69/92 (75.00%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV I+V EAEE TA G++L +++KEKP  G ++AVG G + + G ++PL +A G+TV+++KY+G +    +GT+Y+ LR S+++A+
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLDNGTKEPLEVAEGDTVIFAKYSGTEVT-YEGTDYLILRESDILAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_BACWK (10 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.743e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            LKPL DRV I++ +AEE TA G++L E +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++A++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPETAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAII 93          
The following BLAST results are available for this feature:
BLAST of CX300147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_DESDA2.195e-1946.2410 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH10_ARTCA2.195e-1948.3910 kDa chaperonin OS=Arthrobacter chlorophenolicus... [more]
CH10_RENSM2.866e-1945.1610 kDa chaperonin OS=Renibacterium salmoninarum (s... [more]
CH10_NOCFA3.743e-1947.3710 kDa chaperonin OS=Nocardia farcinica GN=groS PE... [more]
CH10_LISMO3.743e-1946.7410 kDa chaperonin OS=Listeria monocytogenes GN=gro... [more]
CH10_LISMH3.743e-1946.7410 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISMF3.743e-1946.7410 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISMC3.743e-1946.7410 kDa chaperonin OS=Listeria monocytogenes seroty... [more]
CH10_LISIN3.743e-1946.7410 kDa chaperonin OS=Listeria innocua GN=groS PE=3... [more]
CH10_BACWK3.743e-1949.4610 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]

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Properties
Property NameValue
Genbank descriptionC07006G03SK SaltLeaf1 Citrus clementina cDNA clone C07006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300147 ID=CX300147; Name=CX300147; organism=Citrus clementina; type=EST; length=479bp
ATCATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGAT
GAAATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
TGAGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCA
AGGAGAAACCTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTA
GATGAGGAAGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGT
GATGTATTCGAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGCACCA
ACTACATTGCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTG
TCTGTGTTTACTTGAGCGAGGCTTTATATGTATTAGTGAATTGAATTTTA
TGGTTGAGTTGCCTCAAGGCATACGGATTTTGACTGTAATCTTATTTGAA
CATAAAGAATTGCAGCTTGATCAATCGAA
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