CX300147

Overview
NameCX300147
Unique NameCX300147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_ARTS2 (10 kDa chaperonin OS=Arthrobacter sp. (strain FB24) GN=groS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.889e-19
Identity = 44/93 (47.31%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +KPL DR+ ++  EAE+TTA GL++ ++++EKP  G V+AVGPG   E+GNR P+ +A G+ V+YSKY G + K + GT Y+ L A +V+A++
Sbjct:    5 IKPLEDRIVVRPLEAEQTTASGLVIPDSAQEKPQEGEVVAVGPGRF-EDGNRVPVDVAVGDVVIYSKYGGTEVK-TGGTEYLVLSARDVLAIV 95          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LACZE (10 kDa chaperonin OS=Lactobacillus zeae GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV ++V E EE T GG++L   +K+KP  G V+AVG G L  EG R P+++  G+TV+Y KYAG++ K  +G +Y+ L   ++MA+
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVK-YEGQDYLVLHEKDIMAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LACCB (10 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV ++V E EE T GG++L   +K+KP  G V+AVG G L  EG R P+++  G+TV+Y KYAG++ K  +G +Y+ L   ++MA+
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVK-YEGQDYLVLHEKDIMAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_LACC3 (10 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAV 338
            LKPL DRV ++V E EE T GG++L   +K+KP  G V+AVG G L  EG R P+++  G+TV+Y KYAG++ K  +G +Y+ L   ++MA+
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVK-YEGQDYLVLHEKDIMAI 92          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_CYAPA (10 kDa chaperonin, cyanelle OS=Cyanophora paradoxa GN=groS-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:   45 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            T  +K ++PL +RV +KV+++EE TAGG+LL +  KEKP IG +IA GPG  +++G+ +PL +   + V+YSKYAG D K  +   Y+ L   +++A+++
Sbjct:    5 TLNVKTVRPLGERVLVKVSQSEEKTAGGILLPDTVKEKPQIGEIIAEGPGRRNDDGSFQPLEVTVNSKVLYSKYAGTDIK-LENEEYVLLSEKDILAIIA 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_BACHK (10 kDa chaperonin OS=Bacillus thuringiensis subsp. konkukian GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_BACCZ (10 kDa chaperonin OS=Bacillus cereus (strain ZK / E33L) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_BACCQ (10 kDa chaperonin OS=Bacillus cereus (strain Q1) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_BACCN (10 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDRIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_BACC7 (10 kDa chaperonin OS=Bacillus cereus (strain AH187) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.385e-19
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:   63 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            LKPL DRV I++ +AEE TA G++L + +KEKP  G VIAVG G + E G R  L +A G+ +++SKYAG + K  +GT+Y+ LR S+++AV+
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDLIIFSKYAGTEVK-YEGTDYLILRESDILAVI 93          
The following BLAST results are available for this feature:
BLAST of CX300147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10_ARTS24.889e-1947.3110 kDa chaperonin OS=Arthrobacter sp. (strain FB24... [more]
CH10_LACZE6.385e-1946.7410 kDa chaperonin OS=Lactobacillus zeae GN=groS PE... [more]
CH10_LACCB6.385e-1946.7410 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH10_LACC36.385e-1946.7410 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH10_CYAPA6.385e-1942.0010 kDa chaperonin, cyanelle OS=Cyanophora paradoxa... [more]
CH10_BACHK6.385e-1949.4610 kDa chaperonin OS=Bacillus thuringiensis subsp.... [more]
CH10_BACCZ6.385e-1949.4610 kDa chaperonin OS=Bacillus cereus (strain ZK / ... [more]
CH10_BACCQ6.385e-1949.4610 kDa chaperonin OS=Bacillus cereus (strain Q1) G... [more]
CH10_BACCN6.385e-1949.4610 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]
CH10_BACC76.385e-1949.4610 kDa chaperonin OS=Bacillus cereus (strain AH187... [more]

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Properties
Property NameValue
Genbank descriptionC07006G03SK SaltLeaf1 Citrus clementina cDNA clone C07006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300147 ID=CX300147; Name=CX300147; organism=Citrus clementina; type=EST; length=479bp
ATCATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGAT
GAAATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
TGAGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCA
AGGAGAAACCTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTA
GATGAGGAAGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGT
GATGTATTCGAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGCACCA
ACTACATTGCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTG
TCTGTGTTTACTTGAGCGAGGCTTTATATGTATTAGTGAATTGAATTTTA
TGGTTGAGTTGCCTCAAGGCATACGGATTTTGACTGTAATCTTATTTGAA
CATAAAGAATTGCAGCTTGATCAATCGAA
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