CX300149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICFE (Signal recognition particle protein OS=Rickettsia felis GN=ffh PE=3 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26 Identity = 64/153 (41.83%), Postives = 101/153 (66.01%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 452 + DLE F +R+A RIL MGD++SFVEKA ++ +E+AE+ K+ FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MT +ERE P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK Sbjct: 280 LTDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTLKERENPDIINAS--RRKRIAAGAGTTVQKVNILLKQYKQISEMMK 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26 Identity = 67/154 (43.51%), Postives = 99/154 (64.29%), Query Frame = 3 Query: 6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT +ER KPE++ S R++R+A G Q V++L+ Q M+ MK + Sbjct: 280 EALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26 Identity = 67/154 (43.51%), Postives = 99/154 (64.29%), Query Frame = 3 Query: 6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT +ER KPE++ S R++R+A G Q V++L+ Q M+ MK + Sbjct: 280 EALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26 Identity = 67/154 (43.51%), Postives = 99/154 (64.29%), Query Frame = 3 Query: 6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 E LEPF+PDR+A RILGMGDVLS +E + + + AE++ K+ + FD NDFL+Q R + MG M+ ++G +PGMG+I P V+ +K L MEA+I +MT +ER KPE++ S R++R+A G Q V++L+ Q M+ MK + Sbjct: 280 EALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3) HSP 1 Score: 116.701 bits (291), Expect = 5.082e-26 Identity = 62/151 (41.06%), Postives = 98/151 (64.90%), Query Frame = 3 Query: 6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 E LEPFYP+R+AGRILGMGDV S EK + + +A + K++ DFLKQ + + R+G S ++G++PG+ P ++ EK++K +EA++ +MTPEER+ P +L S RRKR+A+ SG + Q+V++ + +M+ MK+L Sbjct: 277 EGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 5.082e-26 Identity = 62/159 (38.99%), Postives = 100/159 (62.89%), Query Frame = 3 Query: 9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA---QLFQMRVRMKNLMGV 467 DL+ F P+R+ GR++G GD++S EK V+ +A+++ KK+ F FNDFL Q V ++GSMS +I MIPG+G + A + + E SL++ ++AM+ +MT +ERE PE+L S RRKR+A SG ++++++ Q +M R+ N G+ Sbjct: 273 DLDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 8.668e-26 Identity = 63/153 (41.18%), Postives = 102/153 (66.67%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 452 + DLE F +R+A RIL MGD++SFV+KA ++ +E+AE+ K+ S FD ND+L+Q R++ +MG ++ M+PG GKI Q+ +++ + KI+ EA+I +MT +ER+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK Sbjct: 280 LTDLEEFNAERLASRILDMGDIISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIFD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICBR (Signal recognition particle protein OS=Rickettsia bellii (strain RML369-C) GN=ffh PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.931e-25 Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 452 + DLE F R+A RIL MGD++SFVEKA ++ +E AE+ K+ FD ND+L+Q +++ ++G ++ M+PG GKI Q+ +++ + KI+ EA+I +MTP+ER P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK Sbjct: 280 LTDLEEFDAKRIASRILDMGDIISFVEKAASIVDREQAEKTAAKLKKGKFDLNDYLQQMKSIKKIGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERRNPDIINAS--RRKRIALGAGTTVQKVNILLKQFKQISDMMK 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 1.931e-25 Identity = 61/159 (38.36%), Postives = 100/159 (62.89%), Query Frame = 3 Query: 9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA---QLFQMRVRMKNLMGV 467 DL+ F P+R+ GR++G GD++S EK V+ +A+++ KK+ F FNDFL Q V ++GSMS +I MIPG+G + A + + E SL++ ++AM+ +MT +E+E PE+L S RRKR+A SG ++++++ Q +M R+ N G+ Sbjct: 273 DLDVFVPERIVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICTY (Signal recognition particle protein OS=Rickettsia typhi GN=ffh PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.302e-25 Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 452 + DLE F +R+A RIL MGD++SFV+KA ++ +E+AE K+ S FD ND+LK R++ +MG ++ M+PG GKI Q+ +++ +I+ EA+I +MT +ER+ P+++ S RRKR+A +G T Q+V+ L+ Q Q+ MK Sbjct: 280 LTDLEEFDAERLASRILDMGDIISFVKKAASIVDREEAERTAIKLKSGKFDLNDYLKHMRSIKKMGGFGSILSMLPGSGKIID-QIDQSKLDSRIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429 The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bpback to top |