CX300149

Overview
NameCX300149
Unique NameCX300149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICFE (Signal recognition particle protein OS=Rickettsia felis GN=ffh PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 64/153 (41.83%), Postives = 101/153 (66.01%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 452
            + DLE F  +R+A RIL MGD++SFVEKA  ++ +E+AE+   K+    FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MT +ERE P+++  S  RRKR+A  +G T Q+V+ L+ Q  Q+   MK
Sbjct:  280 LTDLEEFDAERLASRILDMGDIISFVEKAASIVDREEAEKTAAKLKKGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTLKERENPDIINAS--RRKRIAAGAGTTVQKVNILLKQYKQISEMMK 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_ECOLI (Signal recognition particle protein OS=Escherichia coli (strain K12) GN=ffh PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 67/154 (43.51%), Postives = 99/154 (64.29%), Query Frame = 3
Query:    6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+  MK +
Sbjct:  280 EALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_ECOL6 (Signal recognition particle protein OS=Escherichia coli O6 GN=ffh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 67/154 (43.51%), Postives = 99/154 (64.29%), Query Frame = 3
Query:    6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+  MK +
Sbjct:  280 EALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_ECO57 (Signal recognition particle protein OS=Escherichia coli O157:H7 GN=ffh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 67/154 (43.51%), Postives = 99/154 (64.29%), Query Frame = 3
Query:    6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREA--EKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            E LEPF+PDR+A RILGMGDVLS +E  +  + +  AE++  K+   + FD NDFL+Q R +  MG M+ ++G +PGMG+I P  V+    +K L  MEA+I +MT +ER KPE++  S  R++R+A   G   Q V++L+ Q   M+  MK +
Sbjct:  280 EALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGS--RKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKM 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 5.082e-26
Identity = 62/151 (41.06%), Postives = 98/151 (64.90%), Query Frame = 3
Query:    6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            E LEPFYP+R+AGRILGMGDV S  EK +    + +A +  K++        DFLKQ + + R+G  S ++G++PG+    P  ++  EK++K +EA++ +MTPEER+ P +L  S  RRKR+A+ SG + Q+V++ +    +M+  MK+L
Sbjct:  277 EGLEPFYPERLAGRILGMGDVASLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.082e-26
Identity = 62/159 (38.99%), Postives = 100/159 (62.89%), Query Frame = 3
Query:    9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA---QLFQMRVRMKNLMGV 467
            DL+ F P+R+ GR++G GD++S  EK   V+   +A+++ KK+    F FNDFL Q   V ++GSMS +I MIPG+G +  A +  + E SL++  ++AM+ +MT +ERE PE+L  S  RRKR+A  SG    ++++++    Q  +M  R+ N  G+
Sbjct:  273 DLDVFMPERIVGRLMGAGDIISLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKERENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.668e-26
Identity = 63/153 (41.18%), Postives = 102/153 (66.67%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 452
            + DLE F  +R+A RIL MGD++SFV+KA  ++ +E+AE+   K+ S  FD ND+L+Q R++ +MG    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MT +ER+ P+++  S  RRKR+A  +G T Q+V+ L+ Q  Q+   MK
Sbjct:  280 LTDLEEFNAERLASRILDMGDIISFVKKAASIVDREEAEKTAIKLKSGKFDLNDYLQQMRSIKKMGGFGSILSMLPGSGKIFD-QIDQSKLNSKIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICBR (Signal recognition particle protein OS=Rickettsia bellii (strain RML369-C) GN=ffh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.931e-25
Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 452
            + DLE F   R+A RIL MGD++SFVEKA  ++ +E AE+   K+    FD ND+L+Q +++ ++G    ++ M+PG GKI   Q+ +++ + KI+   EA+I +MTP+ER  P+++  S  RRKR+A  +G T Q+V+ L+ Q  Q+   MK
Sbjct:  280 LTDLEEFDAKRIASRILDMGDIISFVEKAASIVDREQAEKTAAKLKKGKFDLNDYLQQMKSIKKIGGFGSILSMLPGSGKIMD-QIDQSKLNSKIIEHQEAIILSMTPKERRNPDIINAS--RRKRIALGAGTTVQKVNILLKQFKQISDMMK 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.931e-25
Identity = 61/159 (38.36%), Postives = 100/159 (62.89%), Query Frame = 3
Query:    9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA-QVREAEKSLKI--MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVA---QLFQMRVRMKNLMGV 467
            DL+ F P+R+ GR++G GD++S  EK   V+   +A+++ KK+    F FNDFL Q   V ++GSMS +I MIPG+G +  A +  + E SL++  ++AM+ +MT +E+E PE+L  S  RRKR+A  SG    ++++++    Q  +M  R+ N  G+
Sbjct:  273 DLDVFVPERIVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGS--RRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RICTY (Signal recognition particle protein OS=Rickettsia typhi GN=ffh PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.302e-25
Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIM---EAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMK 452
            + DLE F  +R+A RIL MGD++SFV+KA  ++ +E+AE    K+ S  FD ND+LK  R++ +MG    ++ M+PG GKI   Q+ +++   +I+   EA+I +MT +ER+ P+++  S  RRKR+A  +G T Q+V+ L+ Q  Q+   MK
Sbjct:  280 LTDLEEFDAERLASRILDMGDIISFVKKAASIVDREEAERTAIKLKSGKFDLNDYLKHMRSIKKMGGFGSILSMLPGSGKIID-QIDQSKLDSRIIEHQEAIILSMTLKERKNPDIINAS--RRKRIAAGAGMTVQKVNILLKQYKQISAVMK 429          
The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SRP54_RICFE1.747e-2641.83Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_ECOLI1.747e-2643.51Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECOL61.747e-2643.51Signal recognition particle protein OS=Escherichia... [more]
SRP54_ECO571.747e-2643.51Signal recognition particle protein OS=Escherichia... [more]
SRP54_THEAQ5.082e-2641.06Signal recognition particle protein OS=Thermus aqu... [more]
SRP54_HELPJ5.082e-2638.99Signal recognition particle protein OS=Helicobacte... [more]
SRP54_RICPR8.668e-2641.18Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICBR1.931e-2540.52Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_HELPY1.931e-2538.36Signal recognition particle protein OS=Helicobacte... [more]
SRP54_RICTY4.302e-2540.52Signal recognition particle protein OS=Rickettsia ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07006G05SK SaltLeaf1 Citrus clementina cDNA clone C07006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bp
GAATGGAGGACCTTGAACCTTTCTACCCAGATCGCATGGCTGGACGTATC
TTAGGAATGGGAGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTAT
GCAACAAGAAGATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATT
TTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGT
TCGATGAGTCGTGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCC
TGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGA
TCGAAGCAATGACACCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAA
TCTCCTGTCAGAAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACA
GCAGGTGAGCCAACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGA
AGAACTTAATGGGTGTAATGGA
back to top