CX300149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 6.868e-23 Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 ++DLEPF P R R+LG+GD+ +EK +E+ +QE EE +K + F+ D Q + +MG + +++ MIPG+G P + VR E+ L+ ++++MT EE E P+++ S R KR+A+ SG + ++V +L+AQ QMR KNL Sbjct: 278 IDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTEEELENPDIINYS--RIKRIARGSGTSTREVRELLAQYNQMRKMFKNL 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22 Identity = 59/154 (38.31%), Postives = 93/154 (60.39%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 ++DLEPF P R R+LG+GD+ +EK +E+ QQE EE +K + F+ D Q + +MG + +++ MIPGMG P VR E+ LK + ++++MT EE E PE++ S R KR+A+ SG + Q+V +L+ Q QM+ K++ Sbjct: 278 IDDLEPFDPKRFVSRLLGLGDIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHPEIINYS--RIKRIARGSGTSIQEVRELLHQYNQMKKMFKSM 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22 Identity = 58/154 (37.66%), Postives = 92/154 (59.74%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 ++DLEPF P R R+LG+GD+ +EK +E+ +QE EE +K + F+ D Q + +MG + +++ MIPG+G P VR E+ LK + ++++MT EE E PE++ S R KR+A+ SG T +V +L+ Q QM+ K+L Sbjct: 278 IDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENPEIINYS--RIKRIARGSGATTAEVRELLNQYNQMKKMFKSL 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 9.918e-22 Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 ++DLE F P+R R+LGMGD+ S +EK +EV ++E AEE I+S F D Q + +MG + +V+ M+PG GK+ R E++++ ++++MT EE EKP+++ S +R R+A+ SG + V +L+ + MK L Sbjct: 275 IDDLEVFDPERFISRLLGMGDLRSLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGKLPKDASRMTEETIRKYLIIMDSMTEEELEKPDIIKHSRIR--RIARGSGTRNEDVKELLKYYRVTKKAMKGL 424
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.295e-21 Identity = 47/145 (32.41%), Postives = 88/145 (60.69%), Query Frame = 3 Query: 12 LEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVR 446 LE F+P+R+A RILG+GDV++ VEKA+EV ++ + K+ D D L + +MGS+S ++ M+PG ++ V E +K+ + +I +MT EER P+L+ P R++R+ + SG+ ++++L+ + +++ + Sbjct: 280 LEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKTVSKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLINSMTREERRHPKLINRDPSRKQRIIKGSGRKMDELNKLMKEWSKLQTK 424
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.692e-21 Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 419 ++DLEPF P + R+LGMGD+ S +EKA++ M E EE IM F N+ + Q + MGSM +++ MIPG G P ++ E +K + +I +MT EERE P+++ S +R R+A+ SG TE V +++ Sbjct: 278 IDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVL 414
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.886e-21 Identity = 47/148 (31.76%), Postives = 91/148 (61.49%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVR 446 ++ LE F+P+R+A RILG+GDV+S VEKA++V ++D + K+ D D L + + +MGS+S +I M+P ++ E +++ + +I +MT EER P+L+ P R++R+ + SG+ ++++L+ + +M+++ Sbjct: 277 LDGLEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNKMQLK 424
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HAEIN (Signal recognition particle protein OS=Haemophilus influenzae GN=ffh PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.886e-21 Identity = 57/153 (37.25%), Postives = 93/153 (60.78%), Query Frame = 3 Query: 6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 E LEPF+PDR+A RILGMGDVLS +E + + +E AE+M +K +F +DF +Q + +MG M ++ +PG ++ + + + + MEA+I +MT +ER P+++ S RR+R+A SG Q V++L+ Q +M+ MK + Sbjct: 280 EALEPFHPDRVASRILGMGDVLSLIEDLERSVDREKAEKMAQKFKKGDDFTLDDFREQLIEMKKMGGMMSMLEKLPGAKNLSEHVKNQVDDKMFVKMEAIINSMTLKERANPDIIKGS--RRRRIALGSGTQVQDVNKLLKQFDEMQRMMKKM 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 7.107e-20 Identity = 48/140 (34.29%), Postives = 86/140 (61.43%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 419 ++DLEPF P + R+LGMGD+ S +EK ++++ +D EE +M F N+ Q +++MGSM +++ MIPGMG P + E LK + ++++MT E+E P+++ S R KR+A+ +G ++++ +L+ Sbjct: 278 VDDLEPFDPKKFISRLLGMGDLDSLLEKTEDIID-DDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSMTSTEKENPDIIKTS--RMKRIAKGAGVKQEEIKELL 414
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_UNCMA (Signal recognition 54 kDa protein OS=Uncultured methanogenic archaeon RC-I GN=srp54 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19 Identity = 54/156 (34.62%), Postives = 90/156 (57.69%), Query Frame = 3 Query: 6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464 +D+E F PD R+LGMGD+ + VE+A EV+Q++D +K+M F ND Q + +MG + +++ M+P G+ G IT + + LK + ++++MT ER+ P+L+ S R RVA SGK+ ++V +L+ M+ MK + G Sbjct: 274 DDMERFDPDGFISRLLGMGDLRALVERANEVLQKDDVN--VEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLGGNITDDMYKMTQDKLKGYKVIMDSMTAAERDDPKLIGSS--RIARVAHGSGKSPEEVRELLKYHKMMQKAMKGMKG 425 The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bpback to top |