CX300149

Overview
NameCX300149
Unique NameCX300149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.868e-23
Identity = 58/154 (37.66%), Postives = 94/154 (61.04%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            ++DLEPF P R   R+LG+GD+   +EK +E+  +QE  EE  +K +   F+  D   Q   + +MG + +++ MIPG+G   P + VR  E+ L+    ++++MT EE E P+++  S  R KR+A+ SG + ++V +L+AQ  QMR   KNL
Sbjct:  278 IDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTEEELENPDIINYS--RIKRIARGSGTSTREVRELLAQYNQMRKMFKNL 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 59/154 (38.31%), Postives = 93/154 (60.39%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            ++DLEPF P R   R+LG+GD+   +EK +E+  QQE  EE  +K +   F+  D   Q   + +MG + +++ MIPGMG   P   VR  E+ LK  + ++++MT EE E PE++  S  R KR+A+ SG + Q+V +L+ Q  QM+   K++
Sbjct:  278 IDDLEPFDPKRFVSRLLGLGDIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHPEIINYS--RIKRIARGSGTSIQEVRELLHQYNQMKKMFKSM 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 58/154 (37.66%), Postives = 92/154 (59.74%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            ++DLEPF P R   R+LG+GD+   +EK +E+  +QE  EE  +K +   F+  D   Q   + +MG + +++ MIPG+G   P   VR  E+ LK  + ++++MT EE E PE++  S  R KR+A+ SG T  +V +L+ Q  QM+   K+L
Sbjct:  278 IDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENPEIINYS--RIKRIARGSGATTAEVRELLNQYNQMKKMFKSL 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.918e-22
Identity = 54/152 (35.53%), Postives = 89/152 (58.55%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            ++DLE F P+R   R+LGMGD+ S +EK +EV ++E AEE    I+S  F   D   Q   + +MG + +V+ M+PG GK+     R  E++++    ++++MT EE EKP+++  S +R  R+A+ SG   + V +L+      +  MK L
Sbjct:  275 IDDLEVFDPERFISRLLGMGDLRSLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGKLPKDASRMTEETIRKYLIIMDSMTEEELEKPDIIKHSRIR--RIARGSGTRNEDVKELLKYYRVTKKAMKGL 424          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.295e-21
Identity = 47/145 (32.41%), Postives = 88/145 (60.69%), Query Frame = 3
Query:   12 LEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVR 446
            LE F+P+R+A RILG+GDV++ VEKA+EV  ++   +   K+     D  D L     + +MGS+S ++ M+PG   ++   V   E  +K+ + +I +MT EER  P+L+   P R++R+ + SG+   ++++L+ +  +++ +
Sbjct:  280 LEQFHPERIASRILGLGDVMTLVEKAEEVFDKQSLTKTVSKMFLGKMDLEDLLLYMEQMNQMGSVSSIVKMLPGNLTVSDDHVESIEAKVKLWKVLINSMTREERRHPKLINRDPSRKQRIIKGSGRKMDELNKLMKEWSKLQTK 424          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.692e-21
Identity = 54/140 (38.57%), Postives = 83/140 (59.29%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 419
            ++DLEPF P +   R+LGMGD+ S +EKA++ M  E  EE    IM   F  N+ + Q   +  MGSM +++ MIPG G   P ++    E  +K  + +I +MT EERE P+++  S +R  R+A+ SG TE  V +++
Sbjct:  278 IDDLEPFDPKKFISRLLGMGDLESLLEKAED-MVDEKTEESIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKIIKASRIR--RIARGSGTTENDVREVL 414          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.886e-21
Identity = 47/148 (31.76%), Postives = 91/148 (61.49%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVR 446
            ++ LE F+P+R+A RILG+GDV+S VEKA++V  ++D  +   K+     D  D L   + + +MGS+S +I M+P    ++       E  +++ + +I +MT EER  P+L+   P R++R+ + SG+   ++++L+ +  +M+++
Sbjct:  277 LDGLEQFHPERIANRILGLGDVMSLVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNKMQLK 424          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HAEIN (Signal recognition particle protein OS=Haemophilus influenzae GN=ffh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.886e-21
Identity = 57/153 (37.25%), Postives = 93/153 (60.78%), Query Frame = 3
Query:    6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            E LEPF+PDR+A RILGMGDVLS +E  +  + +E AE+M +K     +F  +DF +Q   + +MG M  ++  +PG   ++     + +  + + MEA+I +MT +ER  P+++  S  RR+R+A  SG   Q V++L+ Q  +M+  MK +
Sbjct:  280 EALEPFHPDRVASRILGMGDVLSLIEDLERSVDREKAEKMAQKFKKGDDFTLDDFREQLIEMKKMGGMMSMLEKLPGAKNLSEHVKNQVDDKMFVKMEAIINSMTLKERANPDIIKGS--RRRRIALGSGTQVQDVNKLLKQFDEMQRMMKKM 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.107e-20
Identity = 48/140 (34.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 419
            ++DLEPF P +   R+LGMGD+ S +EK ++++  +D EE    +M   F  N+   Q   +++MGSM +++ MIPGMG   P    +  E  LK  + ++++MT  E+E P+++  S  R KR+A+ +G  ++++ +L+
Sbjct:  278 VDDLEPFDPKKFISRLLGMGDLDSLLEKTEDIID-DDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSMTSTEKENPDIIKTS--RMKRIAKGAGVKQEEIKELL 414          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_UNCMA (Signal recognition 54 kDa protein OS=Uncultured methanogenic archaeon RC-I GN=srp54 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 54/156 (34.62%), Postives = 90/156 (57.69%), Query Frame = 3
Query:    6 EDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464
            +D+E F PD    R+LGMGD+ + VE+A EV+Q++D     +K+M   F  ND   Q   + +MG + +++ M+P  G+ G IT    +  +  LK  + ++++MT  ER+ P+L+  S  R  RVA  SGK+ ++V +L+     M+  MK + G
Sbjct:  274 DDMERFDPDGFISRLLGMGDLRALVERANEVLQKDDVN--VEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLGGNITDDMYKMTQDKLKGYKVIMDSMTAAERDDPKLIGSS--RIARVAHGSGKSPEEVRELLKYHKMMQKAMKGMKG 425          
The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SRP54_THEGJ6.868e-2337.66Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_THEON1.530e-2238.31Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_PYRKO1.530e-2237.66Signal recognition 54 kDa protein OS=Pyrococcus ko... [more]
SRP54_METTH9.918e-2235.53Signal recognition 54 kDa protein OS=Methanobacter... [more]
SRP54_MYCPN1.295e-2132.41Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_METJA1.692e-2138.57Signal recognition 54 kDa protein OS=Methanocaldoc... [more]
SRP54_MYCGE2.886e-2131.76Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_HAEIN2.886e-2137.25Signal recognition particle protein OS=Haemophilus... [more]
SRP54_META37.107e-2034.29Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_UNCMA2.701e-1934.62Signal recognition 54 kDa protein OS=Uncultured me... [more]

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Properties
Property NameValue
Genbank descriptionC07006G05SK SaltLeaf1 Citrus clementina cDNA clone C07006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bp
GAATGGAGGACCTTGAACCTTTCTACCCAGATCGCATGGCTGGACGTATC
TTAGGAATGGGAGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTAT
GCAACAAGAAGATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATT
TTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGT
TCGATGAGTCGTGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCC
TGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGA
TCGAAGCAATGACACCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAA
TCTCCTGTCAGAAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACA
GCAGGTGAGCCAACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGA
AGAACTTAATGGGTGTAATGGA
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