CX300149

Overview
NameCX300149
Unique NameCX300149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18
Identity = 50/154 (32.47%), Postives = 90/154 (58.44%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-REAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            ++DLEPF P R   R+LG+GD+   +EK +E+ ++ E  EE  ++ +   F   D   Q   + +MG + +++ MIPG+G   P +V    E+ L+  + ++++MT EE   P+++  S  R KR+A+ SG + + V +L+ Q  QM+   K++
Sbjct:  278 IDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYS--RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRHO (Signal recognition 54 kDa protein OS=Pyrococcus horikoshii GN=srp54 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 8.688e-18
Identity = 50/154 (32.47%), Postives = 89/154 (57.79%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            ++DLEPF P R   R+LG+GD+   +EK +E+ ++ E  EE   + +   F   D   Q   + +MG + +++ MIPG+G   P + +   E+ L+  + ++++MT EE   PE++  S  R KR+A+ SG + + V +L+ Q  QM+   K++
Sbjct:  278 IDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDIDRFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDELISVGEERLRKFKVIMDSMTEEELMNPEIINYS--RIKRIARGSGTSIKDVKELLTQYNQMKKFFKSM 429          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BUCBP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ffh PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.135e-17
Identity = 49/154 (31.82%), Postives = 91/154 (59.09%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +E+LE FYPDR+A RILGMGD+LS +E  +  + ++  ++    I   N F+FND L     + ++G ++ ++G +P    I  +     ++++ + M+ +I +MT  ER +PEL+  S  R++R++  SG    +++QL+ Q   ++  MK +
Sbjct:  279 LEELELFYPDRIASRILGMGDMLSLIENIENKIDKKHIKKFSNTIKKYNTFNFNDMLLHINQIKKIGGVNSILGKLPKTQTIFNSFQNNIDENILLKMKTIINSMTISERHQPELIKGS--RKRRISLGSGIPIPEINQLLKQFNNIKKIMKTI 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.528e-17
Identity = 50/154 (32.47%), Postives = 91/154 (59.09%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +E+LEPF P +   R+LGMGD+ + +EK + V ++   EE+ ++I S   D   F KQ  ++ ++G +S+V  ++PG    KI+  Q+  ++K+LK   A++ +MT EE + P++L  S +R  R+A  +G T + V +++     ++   K L
Sbjct:  275 VEELEPFNPRKFVARLLGMGDLDALLEKIKAVFEE---EEVLEEIESGRLDLLTFKKQIDSLMKLGPLSKVFQLLPGGLAAKISEEQIELSQKNLKKWRAILSSMTMEELKNPDILNASRIR--RIALGAGVTPKDVKEMLTVYENLKKMSKTL 423          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17
Identity = 51/152 (33.55%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   12 LEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            LEPF+P+R+A RILGM D++S +E  +E + Q   +++ KK+    +F+ NDFL Q + + ++G ++          +++   + +   + +LK +EAMI +MTP+ER KP ++  S  R++R+A  SG   Q V++L+     +R  MK +
Sbjct:  282 LEPFHPERIADRILGMNDIMSLIEDIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQLSNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGS--RKRRIALGSGTQIQDVNKLLKNFDDIRRIMKKI 431          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HALMA (Signal recognition 54 kDa protein OS=Haloarcula marismortui GN=srp54 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.312e-17
Identity = 51/164 (31.10%), Postives = 91/164 (55.49%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSF---VEKAQEVMQQEDAEEMQKK-IMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D+E F P     R+LGMGD+      VE+A E  Q+ D E+   + ++   F   D  KQ +T+  MG + +V+ MIPG+G     ++    +   ++ ++  + ++++MT EE E P ++ +S  R KR+ + SGK E++V +L+ Q  QM   +K   G+
Sbjct:  273 VKDIERFEPSGFISRLLGMGDLKQLTERVERAMEETQEGDEEDWDPEDMLEGQFTLKDMRKQMQTMNNMGPLDQVMDMIPGLGGGLMDQLPDDAMDVTQERMQDFDVIMDSMTEEELENPRVVGQS--RTKRICRGSGKPEERVRELLQQHKQMEQMLKQFQGM 434          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17
Identity = 46/140 (32.86%), Postives = 80/140 (57.14%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-REAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 419
            ++D E F P+R   R+LGMGD+ + +EKA EV  ++  +EM   I+S  F   D   Q   + +MG + +++ +IPG+G   PA   +  E+ L + + ++ +MT  E E PE++ +S  R  R+++ +G T   V  L+
Sbjct:  276 VDDFEAFDPERFISRLLGMGDLDTLIEKAAEVTSEKSDKEMIDSIISGKFTLKDMENQLEMMNKMGPIQQIMKLIPGLGNQLPANASKVTEEKLGMYKILMNSMTTYELENPEVIKKS--RINRISRGAGLTNDDVKDLL 413          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METLZ (Signal recognition 54 kDa protein OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17
Identity = 51/155 (32.90%), Postives = 83/155 (53.55%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464
            ++DLE F P+    R+LGMGD+ + VEKA+E M  ED +     ++   F  ND  KQ   V +MG + +V+ M+P      P+   E     +K    ++++MTP+E ++P L+  S  R  RVA+ SG + ++V  L+     M+  +K   G
Sbjct:  273 IDDLERFDPNGFISRLLGMGDLKALVEKAEESMNAEDVD--VNAMLRGKFTLNDMYKQLEAVQKMGPLKQVLSMLPMGNMNVPSDALEGTADKMKKFRIIMDSMTPQELDEPALINTS--RMIRVAKGSGSSVEEVRDLIKYYKMMQKTLKGFRG 423          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEAC (Signal recognition 54 kDa protein OS=Thermoplasma acidophilum GN=srp54 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.606e-17
Identity = 50/160 (31.25%), Postives = 89/160 (55.62%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464
            M+DLE F P +   R+LG+GD+ S  E  QE  + +E+A+E  +K+M+  F+  D        ++ G M +++       IPG  KI  ++++ AE  L++   ++++MT EE E PE++  +  R  R+A+ +G  E+ V  L+ +   M+  MK + G
Sbjct:  273 MDDLEVFDPKKFLSRLLGLGDLESLFETVQEADITEEEAQESFEKLMTGKFNLKDMYDVWEKFSKPGLMKKLVDALPLARIPGSQKIDDSKIQSAEDKLRMYRIIMDSMTFEELENPEII--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKMMKG 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 9.606e-17
Identity = 50/163 (30.67%), Postives = 93/163 (57.06%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ------LFQMRVRMKNL 458
            +++LE F P R   RILGMGD+ S +EK + + + E  ++  +++MS  A     D  KQ   + +MG +++++ M+PG G   +I   Q++  E+ +K    ++ +MT +E + P ++ +S +R  R+A+ SG + ++V +L+ Q      L +M  R K L
Sbjct:  275 LDELEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKMEEVMSGKAKLTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFLVIMNSMTYKELDNPSIIDKSRIR--RIAKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKGL 435          
The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SRP54_PYRAB6.652e-1832.47Signal recognition 54 kDa protein OS=Pyrococcus ab... [more]
SRP54_PYRHO8.688e-1832.47Signal recognition 54 kDa protein OS=Pyrococcus ho... [more]
SRP54_BUCBP1.135e-1731.82Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_PYRAR2.528e-1732.47Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_BUCAI3.302e-1733.55Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_HALMA4.312e-1731.10Signal recognition 54 kDa protein OS=Haloarcula ma... [more]
SRP54_METST5.632e-1732.86Signal recognition 54 kDa protein OS=Methanosphaer... [more]
SRP54_METLZ5.632e-1732.90Signal recognition 54 kDa protein OS=Methanocorpus... [more]
SRP54_THEAC9.606e-1731.25Signal recognition 54 kDa protein OS=Thermoplasma ... [more]
SRP54_SULTO9.606e-1730.67Signal recognition 54 kDa protein OS=Sulfolobus to... [more]

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Properties
Property NameValue
Genbank descriptionC07006G05SK SaltLeaf1 Citrus clementina cDNA clone C07006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bp
GAATGGAGGACCTTGAACCTTTCTACCCAGATCGCATGGCTGGACGTATC
TTAGGAATGGGAGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTAT
GCAACAAGAAGATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATT
TTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGT
TCGATGAGTCGTGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCC
TGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGA
TCGAAGCAATGACACCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAA
TCTCCTGTCAGAAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACA
GCAGGTGAGCCAACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGA
AGAACTTAATGGGTGTAATGGA
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