CX300149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 6.652e-18 Identity = 50/154 (32.47%), Postives = 90/154 (58.44%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-REAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 ++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F D Q + +MG + +++ MIPG+G P +V E+ L+ + ++++MT EE P+++ S R KR+A+ SG + + V +L+ Q QM+ K++ Sbjct: 278 IDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTEEELMNPDIINYS--RIKRIARGSGTSVKDVKELLNQYNQMKKFFKSM 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRHO (Signal recognition 54 kDa protein OS=Pyrococcus horikoshii GN=srp54 PE=3 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 8.688e-18 Identity = 50/154 (32.47%), Postives = 89/154 (57.79%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 ++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE + + F D Q + +MG + +++ MIPG+G P + + E+ L+ + ++++MT EE PE++ S R KR+A+ SG + + V +L+ Q QM+ K++ Sbjct: 278 IDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDIDRFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDELISVGEERLRKFKVIMDSMTEEELMNPEIINYS--RIKRIARGSGTSIKDVKELLTQYNQMKKFFKSM 429
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BUCBP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ffh PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.135e-17 Identity = 49/154 (31.82%), Postives = 91/154 (59.09%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSAN-FDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKI-MEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +E+LE FYPDR+A RILGMGD+LS +E + + ++ ++ I N F+FND L + ++G ++ ++G +P I + ++++ + M+ +I +MT ER +PEL+ S R++R++ SG +++QL+ Q ++ MK + Sbjct: 279 LEELELFYPDRIASRILGMGDMLSLIENIENKIDKKHIKKFSNTIKKYNTFNFNDMLLHINQIKKIGGVNSILGKLPKTQTIFNSFQNNIDENILLKMKTIINSMTISERHQPELIKGS--RKRRISLGSGIPIPEINQLLKQFNNIKKIMKTI 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.528e-17 Identity = 50/154 (32.47%), Postives = 91/154 (59.09%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +E+LEPF P + R+LGMGD+ + +EK + V ++ EE+ ++I S D F KQ ++ ++G +S+V ++PG KI+ Q+ ++K+LK A++ +MT EE + P++L S +R R+A +G T + V +++ ++ K L Sbjct: 275 VEELEPFNPRKFVARLLGMGDLDALLEKIKAVFEE---EEVLEEIESGRLDLLTFKKQIDSLMKLGPLSKVFQLLPGGLAAKISEEQIELSQKNLKKWRAILSSMTMEELKNPDILNASRIR--RIALGAGVTPKDVKEMLTVYENLKKMSKTL 423
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.302e-17 Identity = 51/152 (33.55%), Postives = 91/152 (59.87%), Query Frame = 3 Query: 12 LEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP--AQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 LEPF+P+R+A RILGM D++S +E +E + Q +++ KK+ +F+ NDFL Q + + ++G ++ +++ + + + +LK +EAMI +MTP+ER KP ++ S R++R+A SG Q V++L+ +R MK + Sbjct: 282 LEPFHPERIADRILGMNDIMSLIEDIEEKVDQSQIQKLTKKLKKGHDFNLNDFLTQIKQMKKIGGLNYFANKFSINHQLSNNISLLNTDKNTLKKIEAMICSMTPKERIKPIIIKGS--RKRRIALGSGTQIQDVNKLLKNFDDIRRIMKKI 431
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HALMA (Signal recognition 54 kDa protein OS=Haloarcula marismortui GN=srp54 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.312e-17 Identity = 51/164 (31.10%), Postives = 91/164 (55.49%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSF---VEKAQEVMQQEDAEEMQKK-IMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D+E F P R+LGMGD+ VE+A E Q+ D E+ + ++ F D KQ +T+ MG + +V+ MIPG+G ++ + ++ ++ + ++++MT EE E P ++ +S R KR+ + SGK E++V +L+ Q QM +K G+ Sbjct: 273 VKDIERFEPSGFISRLLGMGDLKQLTERVERAMEETQEGDEEDWDPEDMLEGQFTLKDMRKQMQTMNNMGPLDQVMDMIPGLGGGLMDQLPDDAMDVTQERMQDFDVIMDSMTEEELENPRVVGQS--RTKRICRGSGKPEERVRELLQQHKQMEQMLKQFQGM 434
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17 Identity = 46/140 (32.86%), Postives = 80/140 (57.14%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-REAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLV 419 ++D E F P+R R+LGMGD+ + +EKA EV ++ +EM I+S F D Q + +MG + +++ +IPG+G PA + E+ L + + ++ +MT E E PE++ +S R R+++ +G T V L+ Sbjct: 276 VDDFEAFDPERFISRLLGMGDLDTLIEKAAEVTSEKSDKEMIDSIISGKFTLKDMENQLEMMNKMGPIQQIMKLIPGLGNQLPANASKVTEEKLGMYKILMNSMTTYELENPEVIKKS--RINRISRGAGLTNDDVKDLL 413
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METLZ (Signal recognition 54 kDa protein OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 5.632e-17 Identity = 51/155 (32.90%), Postives = 83/155 (53.55%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464 ++DLE F P+ R+LGMGD+ + VEKA+E M ED + ++ F ND KQ V +MG + +V+ M+P P+ E +K ++++MTP+E ++P L+ S R RVA+ SG + ++V L+ M+ +K G Sbjct: 273 IDDLERFDPNGFISRLLGMGDLKALVEKAEESMNAEDVD--VNAMLRGKFTLNDMYKQLEAVQKMGPLKQVLSMLPMGNMNVPSDALEGTADKMKKFRIIMDSMTPQELDEPALINTS--RMIRVAKGSGSSVEEVRDLIKYYKMMQKTLKGFRG 423
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEAC (Signal recognition 54 kDa protein OS=Thermoplasma acidophilum GN=srp54 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 9.606e-17 Identity = 50/160 (31.25%), Postives = 89/160 (55.62%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464 M+DLE F P + R+LG+GD+ S E QE + +E+A+E +K+M+ F+ D ++ G M +++ IPG KI ++++ AE L++ ++++MT EE E PE++ + R R+A+ +G E+ V L+ + M+ MK + G Sbjct: 273 MDDLEVFDPKKFLSRLLGLGDLESLFETVQEADITEEEAQESFEKLMTGKFNLKDMYDVWEKFSKPGLMKKLVDALPLARIPGSQKIDDSKIQSAEDKLRMYRIIMDSMTFEELENPEII--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKMMKG 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 9.606e-17 Identity = 50/163 (30.67%), Postives = 93/163 (57.06%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ------LFQMRVRMKNL 458 +++LE F P R RILGMGD+ S +EK + + + E ++ +++MS A D KQ + +MG +++++ M+PG G +I Q++ E+ +K ++ +MT +E + P ++ +S +R R+A+ SG + ++V +L+ Q L +M R K L Sbjct: 275 LDELEVFNPRRFVSRILGMGDIESIIEKIKGMEEYEQIQKKMEEVMSGKAKLTLRDIYKQLTALRKMGPLNKILQMLPGFGVFSQIPEEQLKLGEEKIKKFLVIMNSMTYKELDNPSIIDKSRIR--RIAKGSGTSPEEVKELLKQYQVTNNLLKMVKRRKGL 435 The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bpback to top |