CX300149

Overview
NameCX300149
Unique NameCX300149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HALS3 (Signal recognition 54 kDa protein OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.387e-15
Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSF---VEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D+E F PD    R+LGMGD+      VE+A E  Q +D +   + +M   F  +D  KQ + +  MG + +V+ MIPGMG     ++    +   ++ ++  E ++++MT  E   P  +  S +R  R+A+ SG+ E +V +L+ Q   M   M+   G+
Sbjct:  273 VQDIERFEPDSFISRLLGMGDLKQLTERVERAMEETQDDDEDWDPEDLMKGEFTLHDMRKQMQAMDNMGPLDQVMDMIPGMGGGLMDELPDDAMDVTQERMRGFEVIMDSMTEAEMADPRSVGASQIR--RIARGSGQPEDRVRELLDQHKMMAQTMQQFQGM 433          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAE (Signal recognition 54 kDa protein OS=Pyrobaculum aerophilum GN=srp54 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.366e-15
Identity = 47/154 (30.52%), Postives = 88/154 (57.14%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +++ E F P +   R+LGMGD+ + +EK + V ++   EE+ ++I S   D   F KQ  ++ ++G +S+V  ++PG    KI+  Q+  ++++LK   A++ +MT EE + PE+L  S +R  R+A  +G   + V +++     +R   K L
Sbjct:  275 VDEFEQFSPRKFVARVLGMGDLDTLLEKIKAVFEE---EEVLEEIESGRLDLLTFKKQIDSLLKLGPLSKVFQLLPGNLAAKISEEQIELSQRNLKKWRAILSSMTLEELKNPEILNASRIR--RIALGAGVAPKDVKEMLTVYENLRKMSKTL 423          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RAT (Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K + G+
Sbjct:  279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PONAB (Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K + G+
Sbjct:  279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MOUSE (Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K + G+
Sbjct:  279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MACFA (Signal recognition particle 54 kDa protein OS=Macaca fascicularis GN=SRP54 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K + G+
Sbjct:  279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HUMAN (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K + G+
Sbjct:  279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_CANFA (Signal recognition particle 54 kDa protein OS=Canis familiaris GN=SRP54 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K + G+
Sbjct:  279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BOVIN (Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15
Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D EPF       ++LGMGD+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q  +    +K + G+
Sbjct:  279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SULAC (Signal recognition 54 kDa protein OS=Sulfolobus acidocaldarius GN=srp54 PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.271e-15
Identity = 43/150 (28.67%), Postives = 87/150 (58.00%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 437
            +++LE F P R   R+LG+GD+ S +EK + V   E+ E+  + ++S        D  KQ   + +MG + ++  M+PG G   ++   Q++  E+ ++   A++ +MT +E + P ++ ++  R +R+A+ +G T ++V +L+ Q +QM
Sbjct:  275 LDELEVFNPRRFVSRLLGLGDIESIIEKIKSVEDYENLEKRMEDVISGKTKLTLRDIYKQLIALRKMGPLGKIFQMLPGAGILSQVPEEQLKLGEEKIRTFMAIMNSMTYKELDNPSIIDKA--RMRRIAKGAGVTVEEVKELLKQ-YQM 421          
The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SRP54_HALS31.387e-1530.06Signal recognition 54 kDa protein OS=Halobacterium... [more]
SRP54_PYRAE2.366e-1530.52Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_RAT4.036e-1526.88Signal recognition particle 54 kDa protein OS=Ratt... [more]
SRP54_PONAB4.036e-1526.88Signal recognition particle 54 kDa protein OS=Pong... [more]
SRP54_MOUSE4.036e-1526.88Signal recognition particle 54 kDa protein OS=Mus ... [more]
SRP54_MACFA4.036e-1526.88Signal recognition particle 54 kDa protein OS=Maca... [more]
SRP54_HUMAN4.036e-1526.88Signal recognition particle 54 kDa protein OS=Homo... [more]
SRP54_CANFA4.036e-1526.88Signal recognition particle 54 kDa protein OS=Cani... [more]
SRP54_BOVIN4.036e-1526.88Signal recognition particle 54 kDa protein OS=Bos ... [more]
SRP54_SULAC5.271e-1528.67Signal recognition 54 kDa protein OS=Sulfolobus ac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07006G05SK SaltLeaf1 Citrus clementina cDNA clone C07006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bp
GAATGGAGGACCTTGAACCTTTCTACCCAGATCGCATGGCTGGACGTATC
TTAGGAATGGGAGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTAT
GCAACAAGAAGATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATT
TTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGT
TCGATGAGTCGTGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCC
TGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGA
TCGAAGCAATGACACCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAA
TCTCCTGTCAGAAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACA
GCAGGTGAGCCAACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGA
AGAACTTAATGGGTGTAATGGA
back to top