CX300149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HALS3 (Signal recognition 54 kDa protein OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=srp54 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.387e-15 Identity = 49/163 (30.06%), Postives = 86/163 (52.76%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSF---VEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG-----KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D+E F PD R+LGMGD+ VE+A E Q +D + + +M F +D KQ + + MG + +V+ MIPGMG ++ + ++ ++ E ++++MT E P + S +R R+A+ SG+ E +V +L+ Q M M+ G+ Sbjct: 273 VQDIERFEPDSFISRLLGMGDLKQLTERVERAMEETQDDDEDWDPEDLMKGEFTLHDMRKQMQAMDNMGPLDQVMDMIPGMGGGLMDELPDDAMDVTQERMRGFEVIMDSMTEAEMADPRSVGASQIR--RIARGSGQPEDRVRELLDQHKMMAQTMQQFQGM 433
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAE (Signal recognition 54 kDa protein OS=Pyrobaculum aerophilum GN=srp54 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.366e-15 Identity = 47/154 (30.52%), Postives = 88/154 (57.14%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +++ E F P + R+LGMGD+ + +EK + V ++ EE+ ++I S D F KQ ++ ++G +S+V ++PG KI+ Q+ ++++LK A++ +MT EE + PE+L S +R R+A +G + V +++ +R K L Sbjct: 275 VDEFEQFSPRKFVARVLGMGDLDTLLEKIKAVFEE---EEVLEEIESGRLDLLTFKKQIDSLLKLGPLSKVFQLLPGNLAAKISEEQIELSQRNLKKWRAILSSMTLEELKNPEILNASRIR--RIALGAGVAPKDVKEMLTVYENLRKMSKTL 423
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_RAT (Signal recognition particle 54 kDa protein OS=Rattus norvegicus GN=Srp54 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15 Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+ Sbjct: 279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PONAB (Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15 Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+ Sbjct: 279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MOUSE (Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15 Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+ Sbjct: 279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_MACFA (Signal recognition particle 54 kDa protein OS=Macaca fascicularis GN=SRP54 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15 Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+ Sbjct: 279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HUMAN (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15 Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+ Sbjct: 279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_CANFA (Signal recognition particle 54 kDa protein OS=Canis familiaris GN=SRP54 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15 Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+ Sbjct: 279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BOVIN (Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.036e-15 Identity = 43/160 (26.88%), Postives = 88/160 (55.00%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D EPF ++LGMGD+ ++K E ++ +D E + +K+ F D +Q + + +MG S+++GMIPG G ++ +E+ LK + ++++M +E + + + ++ P R +RVA+ SG + + V +L+ Q + +K + G+ Sbjct: 279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGI 437
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SULAC (Signal recognition 54 kDa protein OS=Sulfolobus acidocaldarius GN=srp54 PE=3 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 5.271e-15 Identity = 43/150 (28.67%), Postives = 87/150 (58.00%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG---KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQM 437 +++LE F P R R+LG+GD+ S +EK + V E+ E+ + ++S D KQ + +MG + ++ M+PG G ++ Q++ E+ ++ A++ +MT +E + P ++ ++ R +R+A+ +G T ++V +L+ Q +QM Sbjct: 275 LDELEVFNPRRFVSRLLGLGDIESIIEKIKSVEDYENLEKRMEDVISGKTKLTLRDIYKQLIALRKMGPLGKIFQMLPGAGILSQVPEEQLKLGEEKIRTFMAIMNSMTYKELDNPSIIDKA--RMRRIAKGAGVTVEEVKELLKQ-YQM 421 The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bpback to top |