CX300149

Overview
NameCX300149
Unique NameCX300149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRIL (Signal recognition 54 kDa protein OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.884e-15
Identity = 47/154 (30.52%), Postives = 89/154 (57.79%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +++ + F P +   R+LGMGD+ + VEK + V ++   E++ ++I S   D   F KQ   + ++G +S+V+ ++PG    KI+  QV  ++K+LK   A++ +MT EE + P++L  S +R  R+A  +G T + V +++     ++   K L
Sbjct:  275 VDEFDLFNPRKFVARVLGMGDLDALVEKIKAVFEE---EKVLQEIESGRLDLLTFKKQIEGLLKLGPLSKVLQLLPGGFAAKISEEQVELSQKNLKKWYAILSSMTIEELKNPDILNASRIR--RIALGAGVTPKDVKEMLTVYENLKKMSKTL 423          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_NATPD (Signal recognition 54 kDa protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=srp54 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.991e-15
Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEE--MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D+E F P     R+LGMGD+    E+ +  M++  AEE    + +M   F   D   Q   + +MG + +V+ MIPG+G     Q+ +      ++ L+  E ++++M+  E E P  + +S +  +R+A+ SG  E  V +L+ Q   M   MK   G+
Sbjct:  273 VKDIERFEPSGFISRLLGMGDLKQLSERVERAMEETQAEEDWDPEDLMKGEFTLKDMRNQMNAMNKMGPLDQVMDMIPGLGGGIKDQLPDDAMDMTQERLRDFEVIMDSMSEAELENPRAIGQSQI--ERIARGSGTDEDTVRELLEQHKMMSRMMKQFQGM 432          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_STAMF (Signal recognition 54 kDa protein OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14
Identity = 47/154 (30.52%), Postives = 86/154 (55.84%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVR--EAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +++LE F P R   RILG+GD+   +EK + + + E  E+  ++ +S   +     KQ  ++ +MG + +++ MIPG+    P ++   +AE+ +K   A+I +MT EE +KPE++    +R  R+A  +G   + V +L+ Q   M+   K L
Sbjct:  275 IDELEVFRPPRFVARILGIGDLEGLIEKVRRI-KVEFTEKDVEEFLSGRLNMRLVYKQLVSLRKMGPLRKILQMIPGLSLKIPLEIEAGKAEEKIKKWLAIINSMTYEELDKPEIIDRRRIR--RIAYGAGVKPEDVRELLKQYEMMKKLSKQL 425          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HALWD (Signal recognition 54 kDa protein OS=Haloquadratum walsbyi (strain DSM 16790) GN=srp54 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM---QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            ++D+E F P+    R+LGMGD+    E+ +  M   Q+ D +   + IM  +F   D  KQ   + RMG + +V+ MIPG+G     Q+ +      +  ++  + ++++MT  E E P  +  S VR  R+A+ SG  E+ V +L+ Q   M   +K   G+
Sbjct:  273 VQDVERFEPNGFISRLLGMGDLKQLSERVERAMAETQEADDDWDPEDIMEGSFTLKDMRKQMEAMDRMGPLDQVMDMIPGLGGGLKDQLPDDAMDVTQNRMRDFDVIMDSMTEAELEDPRSVGASRVR--RIARGSGTDEETVRELLQQHKMMERTIKQFQGM 433          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METS5 (Signal recognition 54 kDa protein OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 45/157 (28.66%), Postives = 87/157 (55.41%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +++LE F P R   RILGMGD+ + +EK + +   E  ++   ++M+  +     D  KQ   V +MG +S+++ +IPG   MG I   QV+  E+ ++   +++ +MT +E + P ++ +   R +R+A  SG   ++V +L+     ++  +K L
Sbjct:  276 IDELEVFNPRRFVARILGMGDLEAIIEKMKAMEDYEGIQKKMGEVMTGKSKLTLRDMYKQIVAVRKMGPLSKILQLIPGMNMMGDIPEDQVKVGEQKMQRWLSIMNSMTYQELDNPSIIDKQ--RMRRIAMGSGTEVEEVRELIEHFNTVQRTLKML 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ffh PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 50/155 (32.26%), Postives = 86/155 (55.48%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ--VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +  LEPF+P+R+A RILGM  V+S ++  +E + Q   + + KK     +F+ NDFL Q + +  MG+++  I       KI      + E + +L  +EA+I +MT +ER  P ++  S  R++R+A  SG   Q V++L+     ++  MK +
Sbjct:  279 LHQLEPFHPERIADRILGMNQVISLIKDIEEKVNQSQVKNLTKKFRKGDDFNLNDFLIQLKEMKNMGNLNYFIEKF-SKNKILSNNPLLGENKNTLNRIEAIIYSMTHKERMHPIIIKGS--RKRRIALGSGTKIQDVNKLLKNFDNIKKIMKKI 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEVO (Signal recognition 54 kDa protein OS=Thermoplasma volcanium GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 46/160 (28.75%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464
            M+D+E F P +   R+LG+GD+ +  E  +E  + +E+A++  +K+M+  F+  D        +R G M +++       +PG  KI   Q+  AE+ L+    ++++MT +E E PE++  +  R  R+A+ +G  E+ V  L+ +   M+  MK + G
Sbjct:  273 MDDMEIFDPKKFLSRLLGLGDLETLFETVKEANITEEEAQKSFEKLMTGKFNLKDMYDVWEKFSRPGLMKKLVDSLPLAKLPGSQKINDDQILTAEQKLQRYRIIMDSMTFQELENPEII--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKLMKG 430          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 44/150 (29.33%), Postives = 85/150 (56.67%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 440
            ++DLE F P     R+LG+GD+   + + +E++++E+  E    ++   F   D  +Q   +++MG + +++  +PGMG      VR+     E+ LK  + ++++MT +E E PE+L +S +R  R+A  SG +E+ V +L+     M+
Sbjct:  277 VDDLEEFNPRSFVARLLGIGDIDELLRRTEEMLEEEEKAE---DVLEGEFTLKDLYEQLEALSKMGPVDKLLQYVPGMG--GGRNVRKISQITEERLKKYKVIMDSMTEKELENPEILNKSRIR--RIAIGSGTSERDVIELLNHYRMMK 419          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HYPBU (Signal recognition 54 kDa protein OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 46/155 (29.68%), Postives = 82/155 (52.90%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA---QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            ++++E F P R   R+LGMGD+ S +EK + +   E+ E+   ++MS    F    KQ + V ++G   +++ MIPG+  +  +     R +E+ +K    ++ +MT EE + P LL E   R KR+A  +G    +V +L      ++  M+ L
Sbjct:  278 IDEIEVFRPKRFVARLLGMGDLESLLEKIERLRGVEEFEKTVAEMMSGKITFRTIYKQLQQVTKLGPFRKILQMIPGISTMLESLDEAARLSEEKVKKWLTIMNSMTYEELDNPNLLEERS-RVKRIAVGAGVEPSEVRELYNYYKSVKKMMRQL 431          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRCJ (Signal recognition 54 kDa protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14
Identity = 45/154 (29.22%), Postives = 87/154 (56.49%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG--KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458
            +++ E F P +   R+LGMGD+ + VEK + V +++   E   ++ S   D   F KQ  ++ ++G +S+V  ++P     K++  Q+  ++K+L+  +A++ +MT EE + PE+L  S +R  R+A  +G T + V +++     M+   K L
Sbjct:  274 VDEFELFNPRKFVARVLGMGDLDALVEKIKAVFEEDKVLE---ELESGRLDLLTFKKQIDSLLKLGPLSKVFQLLPSNFAIKVSEEQIELSQKNLRKWKAILSSMTMEELKHPEVLNASRIR--RIAMGAGVTPKDVKEMLTVFENMKKMSKML 422          
The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SRP54_PYRIL6.884e-1530.52Signal recognition 54 kDa protein OS=Pyrobaculum i... [more]
SRP54_NATPD8.991e-1529.01Signal recognition 54 kDa protein OS=Natronomonas ... [more]
SRP54_STAMF1.174e-1430.52Signal recognition 54 kDa protein OS=Staphylotherm... [more]
SRP54_HALWD1.534e-1430.06Signal recognition 54 kDa protein OS=Haloquadratum... [more]
SRP54_METS52.616e-1428.66Signal recognition 54 kDa protein OS=Metallosphaer... [more]
SRP54_BUCAP2.616e-1432.26Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_THEVO3.417e-1428.75Signal recognition 54 kDa protein OS=Thermoplasma ... [more]
SRP54_METKA3.417e-1429.33Signal recognition 54 kDa protein OS=Methanopyrus ... [more]
SRP54_HYPBU3.417e-1429.68Signal recognition 54 kDa protein OS=Hyperthermus ... [more]
SRP54_PYRCJ7.611e-1429.22Signal recognition 54 kDa protein OS=Pyrobaculum c... [more]

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Properties
Property NameValue
Genbank descriptionC07006G05SK SaltLeaf1 Citrus clementina cDNA clone C07006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bp
GAATGGAGGACCTTGAACCTTTCTACCCAGATCGCATGGCTGGACGTATC
TTAGGAATGGGAGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTAT
GCAACAAGAAGATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATT
TTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGT
TCGATGAGTCGTGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCC
TGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGA
TCGAAGCAATGACACCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAA
TCTCCTGTCAGAAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACA
GCAGGTGAGCCAACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGA
AGAACTTAATGGGTGTAATGGA
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