CX300149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRIL (Signal recognition 54 kDa protein OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 6.884e-15 Identity = 47/154 (30.52%), Postives = 89/154 (57.79%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +++ + F P + R+LGMGD+ + VEK + V ++ E++ ++I S D F KQ + ++G +S+V+ ++PG KI+ QV ++K+LK A++ +MT EE + P++L S +R R+A +G T + V +++ ++ K L Sbjct: 275 VDEFDLFNPRKFVARVLGMGDLDALVEKIKAVFEE---EKVLQEIESGRLDLLTFKKQIEGLLKLGPLSKVLQLLPGGFAAKISEEQVELSQKNLKKWYAILSSMTIEELKNPDILNASRIR--RIALGAGVTPKDVKEMLTVYENLKKMSKTL 423
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_NATPD (Signal recognition 54 kDa protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=srp54 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.991e-15 Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEE--MQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D+E F P R+LGMGD+ E+ + M++ AEE + +M F D Q + +MG + +V+ MIPG+G Q+ + ++ L+ E ++++M+ E E P + +S + +R+A+ SG E V +L+ Q M MK G+ Sbjct: 273 VKDIERFEPSGFISRLLGMGDLKQLSERVERAMEETQAEEDWDPEDLMKGEFTLKDMRNQMNAMNKMGPLDQVMDMIPGLGGGIKDQLPDDAMDMTQERLRDFEVIMDSMSEAELENPRAIGQSQI--ERIARGSGTDEDTVRELLEQHKMMSRMMKQFQGM 432
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_STAMF (Signal recognition 54 kDa protein OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14 Identity = 47/154 (30.52%), Postives = 86/154 (55.84%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVR--EAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +++LE F P R RILG+GD+ +EK + + + E E+ ++ +S + KQ ++ +MG + +++ MIPG+ P ++ +AE+ +K A+I +MT EE +KPE++ +R R+A +G + V +L+ Q M+ K L Sbjct: 275 IDELEVFRPPRFVARILGIGDLEGLIEKVRRI-KVEFTEKDVEEFLSGRLNMRLVYKQLVSLRKMGPLRKILQMIPGLSLKIPLEIEAGKAEEKIKKWLAIINSMTYEELDKPEIIDRRRIR--RIAYGAGVKPEDVRELLKQYEMMKKLSKQL 425
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HALWD (Signal recognition 54 kDa protein OS=Haloquadratum walsbyi (strain DSM 16790) GN=srp54 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14 Identity = 49/163 (30.06%), Postives = 84/163 (51.53%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM---QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 ++D+E F P+ R+LGMGD+ E+ + M Q+ D + + IM +F D KQ + RMG + +V+ MIPG+G Q+ + + ++ + ++++MT E E P + S VR R+A+ SG E+ V +L+ Q M +K G+ Sbjct: 273 VQDVERFEPNGFISRLLGMGDLKQLSERVERAMAETQEADDDWDPEDIMEGSFTLKDMRKQMEAMDRMGPLDQVMDMIPGLGGGLKDQLPDDAMDVTQNRMRDFDVIMDSMTEAELEDPRSVGASRVR--RIARGSGTDEETVRELLQQHKMMERTIKQFQGM 433
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METS5 (Signal recognition 54 kDa protein OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14 Identity = 45/157 (28.66%), Postives = 87/157 (55.41%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMS--ANFDFNDFLKQTRTVARMGSMSRVIGMIPG---MGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +++LE F P R RILGMGD+ + +EK + + E ++ ++M+ + D KQ V +MG +S+++ +IPG MG I QV+ E+ ++ +++ +MT +E + P ++ + R +R+A SG ++V +L+ ++ +K L Sbjct: 276 IDELEVFNPRRFVARILGMGDLEAIIEKMKAMEDYEGIQKKMGEVMTGKSKLTLRDMYKQIVAVRKMGPLSKILQLIPGMNMMGDIPEDQVKVGEQKMQRWLSIMNSMTYQELDNPSIIDKQ--RMRRIAMGSGTEVEEVRELIEHFNTVQRTLKML 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ffh PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14 Identity = 50/155 (32.26%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSA-NFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ--VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 + LEPF+P+R+A RILGM V+S ++ +E + Q + + KK +F+ NDFL Q + + MG+++ I KI + E + +L +EA+I +MT +ER P ++ S R++R+A SG Q V++L+ ++ MK + Sbjct: 279 LHQLEPFHPERIADRILGMNQVISLIKDIEEKVNQSQVKNLTKKFRKGDDFNLNDFLIQLKEMKNMGNLNYFIEKF-SKNKILSNNPLLGENKNTLNRIEAIIYSMTHKERMHPIIIKGS--RKRRIALGSGTKIQDVNKLLKNFDNIKKIMKKI 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_THEVO (Signal recognition 54 kDa protein OS=Thermoplasma volcanium GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14 Identity = 46/160 (28.75%), Postives = 87/160 (54.37%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464 M+D+E F P + R+LG+GD+ + E +E + +E+A++ +K+M+ F+ D +R G M +++ +PG KI Q+ AE+ L+ ++++MT +E E PE++ + R R+A+ +G E+ V L+ + M+ MK + G Sbjct: 273 MDDMEIFDPKKFLSRLLGLGDLETLFETVKEANITEEEAQKSFEKLMTGKFNLKDMYDVWEKFSRPGLMKKLVDSLPLAKLPGSQKINDDQILTAEQKLQRYRIIMDSMTFQELENPEII--NAKRITRIARGAGVREEDVRMLLKEFKAMKNNMKLMKG 430
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14 Identity = 44/150 (29.33%), Postives = 85/150 (56.67%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE----AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMR 440 ++DLE F P R+LG+GD+ + + +E++++E+ E ++ F D +Q +++MG + +++ +PGMG VR+ E+ LK + ++++MT +E E PE+L +S +R R+A SG +E+ V +L+ M+ Sbjct: 277 VDDLEEFNPRSFVARLLGIGDIDELLRRTEEMLEEEEKAE---DVLEGEFTLKDLYEQLEALSKMGPVDKLLQYVPGMG--GGRNVRKISQITEERLKKYKVIMDSMTEKELENPEILNKSRIR--RIAIGSGTSERDVIELLNHYRMMK 419
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_HYPBU (Signal recognition 54 kDa protein OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14 Identity = 46/155 (29.68%), Postives = 82/155 (52.90%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA---QVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 ++++E F P R R+LGMGD+ S +EK + + E+ E+ ++MS F KQ + V ++G +++ MIPG+ + + R +E+ +K ++ +MT EE + P LL E R KR+A +G +V +L ++ M+ L Sbjct: 278 IDEIEVFRPKRFVARLLGMGDLESLLEKIERLRGVEEFEKTVAEMMSGKITFRTIYKQLQQVTKLGPFRKILQMIPGISTMLESLDEAARLSEEKVKKWLTIMNSMTYEELDNPNLLEERS-RVKRIAVGAGVEPSEVRELYNYYKSVKKMMRQL 431
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_PYRCJ (Signal recognition 54 kDa protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 7.611e-14 Identity = 45/154 (29.22%), Postives = 87/154 (56.49%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG--KITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 458 +++ E F P + R+LGMGD+ + VEK + V +++ E ++ S D F KQ ++ ++G +S+V ++P K++ Q+ ++K+L+ +A++ +MT EE + PE+L S +R R+A +G T + V +++ M+ K L Sbjct: 274 VDEFELFNPRKFVARVLGMGDLDALVEKIKAVFEEDKVLE---ELESGRLDLLTFKKQIDSLLKLGPLSKVFQLLPSNFAIKVSEEQIELSQKNLRKWKAILSSMTMEELKHPEVLNASRIR--RIAMGAGVTPKDVKEMLTVFENMKKMSKML 422 The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bpback to top |