CX300149

Overview
NameCX300149
Unique NameCX300149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length472
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12
Identity = 45/159 (28.30%), Postives = 84/159 (52.83%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG--KITPAQVREAEKSLKIMEAMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNL 458
            M++ E F       R+LGMGD   FV+K QEV+ ++   E+ +K+   NF       Q + +  MG +  V  M+PG+    +     +E++  +K    M+++MT +E +   P++  ES  R  R+A+ SG+  ++V +++ +   L ++  +MK L
Sbjct:  279 MDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNES--RMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGL 435          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.455e-12
Identity = 46/159 (28.93%), Postives = 82/159 (51.57%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME--AMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNL 458
            M++ E F       R+LGMGD   F++K  EV+  +   E+ +K+   +F      +Q + + +MG + +V  M+PG       + RE E   KI     M+++MT EE +   P+L+ +S  R  R+A+ SG+   +V  ++ +   L ++  +MK L
Sbjct:  279 MDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDS--RIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGL 435          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SCHPO (Signal recognition particle 54 kDa protein homolog OS=Schizosaccharomyces pombe GN=srp54 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.304e-12
Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELL-AESPVRRKRVAQDSGKTEQQVSQLVAQL 428
            + DLE F P     ++LG+GD+   +E  Q +    D + M K +    F   DF  Q   + ++G +S++  MIPGM   +      E    +K M  ++++MT +E +   LL  E P R  RVA+ SG +  +V + ++Q+
Sbjct:  279 INDLERFSPRSFISKLLGLGDLEGLMEHVQSL--DFDKKNMVKNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNMMNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVEETISQV 420          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_CANAL (Signal recognition particle 54 kDa protein homolog OS=Candida albicans GN=SRP54 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.587e-11
Identity = 47/156 (30.13%), Postives = 74/156 (47.44%), Query Frame = 3
Query:    9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ--KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV--REAEKSLKIMEAMIEAMTPEERE-KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM 461
            DLE F P     ++LG+GD+   +E  Q +   +D    Q  + I    F   DF  Q     +MG ++ +  MIPG+  I  +QV   E  K +K M  ++++MT +E E    +  + P R  RVA+ SG    +V  ++ Q   M    K+ M
Sbjct:  298 DLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLRDFQNQMNNFLKMGPLTNIASMIPGLSNIM-SQVGDEETSKKIKNMIYIMDSMTTKELECDGRIFIKEPSRIVRVARGSGCAVVEVEMILQQHRMMSTMAKSAM 452          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.073e-11
Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME--AMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNL 458
            M++ E F       R+LGMGD+   V K Q+V+  +   E+ +K+   +F      +Q +++ +MG +  V  M+PG       Q RE E   K      M+++MT EE +   P++L ES  R  R+A+ SG+   +V +++ +   L ++  +MK L
Sbjct:  280 MDEFEVFDVKPFVSRLLGMGDLSGLVNKIQDVVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLG-VFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTES--RIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGL 435          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_YARLI (Signal recognition particle 54 kDa protein homolog OS=Yarrowia lipolytica GN=SRP54 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKP-ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464
            + DLE F P +   ++LG+GD+   +E  Q +    D ++  + I    F   D   Q   + +MGS+S + GMIPG+ G  +     E  + +K M  ++++M  +E +    +  E P R  RVA+ SG + ++V +++ Q  +M   M + MG
Sbjct:  281 IHDLEAFSPKQFISKLLGIGDLQGLMETMQSL--NLDQKKTMEHIQEGIFTLADLRDQMGNMLKMGSLSSIAGMIPGLSGMASSISDEEGTRRIKRMIYILDSMNQKELDSDGSIFKEVPSRITRVARGSGTSIREVEEVLQQQ-KMMASMASRMG 433          
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11
Identity = 42/159 (26.42%), Postives = 81/159 (50.94%), Query Frame = 3
Query:    3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITP-AQVREAEKSLKIMEAMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467
            M++ E F       R+LG GD+  FV K QEV+ ++   E+ + +    F       Q + +  MG +  V  M+PGM  ++ P    +E++  +K    M+++MT EE +   P++  ES  R  R+A+ SG+  ++V +++ +  ++      + G+
Sbjct:  279 MDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNES--RIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGL 435          
The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SR543_ARATH1.435e-1228.30Signal recognition particle 54 kDa protein 3 OS=Ar... [more]
SR542_SOLLC5.455e-1228.93Signal recognition particle 54 kDa protein 2 OS=So... [more]
SRP54_SCHPO9.304e-1229.86Signal recognition particle 54 kDa protein homolog... [more]
SRP54_CANAL1.587e-1130.13Signal recognition particle 54 kDa protein homolog... [more]
SR541_SOLLC2.073e-1129.56Signal recognition particle 54 kDa protein 1 OS=So... [more]
SRP54_YARLI3.536e-1128.85Signal recognition particle 54 kDa protein homolog... [more]
SR542_ARATH7.876e-1126.42Signal recognition particle 54 kDa protein 2 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC07006G05SK SaltLeaf1 Citrus clementina cDNA clone C07006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bp
GAATGGAGGACCTTGAACCTTTCTACCCAGATCGCATGGCTGGACGTATC
TTAGGAATGGGAGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTAT
GCAACAAGAAGATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATT
TTGACTTCAATGATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGT
TCGATGAGTCGTGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCC
TGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGA
TCGAAGCAATGACACCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAA
TCTCCTGTCAGAAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACA
GCAGGTGAGCCAACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGA
AGAACTTAATGGGTGTAATGGA
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