CX300149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR543_ARATH (Signal recognition particle 54 kDa protein 3 OS=Arabidopsis thaliana GN=SRP-54C PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.435e-12 Identity = 45/159 (28.30%), Postives = 84/159 (52.83%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG--KITPAQVREAEKSLKIMEAMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNL 458 M++ E F R+LGMGD FV+K QEV+ ++ E+ +K+ NF Q + + MG + V M+PG+ + +E++ +K M+++MT +E + P++ ES R R+A+ SG+ ++V +++ + L ++ +MK L Sbjct: 279 MDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNPKVFNES--RMMRIARGSGRQVREVMEMLEEYKRLAKIWSKMKGL 435
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR542_SOLLC (Signal recognition particle 54 kDa protein 2 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.455e-12 Identity = 46/159 (28.93%), Postives = 82/159 (51.57%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME--AMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNL 458 M++ E F R+LGMGD F++K EV+ + E+ +K+ +F +Q + + +MG + +V M+PG + RE E KI M+++MT EE + P+L+ +S R R+A+ SG+ +V ++ + L ++ +MK L Sbjct: 279 MDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGHFTLRIMYEQFQNILKMGPIGQVFSMLPGFSAELMPKGRENESQAKIKRYMTMMDSMTNEELDSSNPKLMTDS--RIMRIARGSGRQVHEVMDMMEEYKRLAKIWSKMKGL 435
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_SCHPO (Signal recognition particle 54 kDa protein homolog OS=Schizosaccharomyces pombe GN=srp54 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 9.304e-12 Identity = 43/144 (29.86%), Postives = 73/144 (50.69%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK-ITPAQVREAEKSLKIMEAMIEAMTPEEREKPELL-AESPVRRKRVAQDSGKTEQQVSQLVAQL 428 + DLE F P ++LG+GD+ +E Q + D + M K + F DF Q + ++G +S++ MIPGM + E +K M ++++MT +E + LL E P R RVA+ SG + +V + ++Q+ Sbjct: 279 INDLERFSPRSFISKLLGLGDLEGLMEHVQSL--DFDKKNMVKNLEQGKFTVRDFRDQLGNIMKLGPLSKMASMIPGMSNMMNGMNDEEGSLRMKRMLYIVDSMTEQELDSDGLLFVEQPSRVLRVARGSGTSVLEVEETISQV 420
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_CANAL (Signal recognition particle 54 kDa protein homolog OS=Candida albicans GN=SRP54 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.587e-11 Identity = 47/156 (30.13%), Postives = 74/156 (47.44%), Query Frame = 3 Query: 9 DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQ--KKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV--REAEKSLKIMEAMIEAMTPEERE-KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM 461 DLE F P ++LG+GD+ +E Q + +D Q + I F DF Q +MG ++ + MIPG+ I +QV E K +K M ++++MT +E E + + P R RVA+ SG +V ++ Q M K+ M Sbjct: 298 DLEIFKPTTFISKLLGIGDIQGLIEHVQSLNLHQDEGHKQTIEHIKEGKFTLRDFQNQMNNFLKMGPLTNIASMIPGLSNIM-SQVGDEETSKKIKNMIYIMDSMTTKELECDGRIFIKEPSRIVRVARGSGCAVVEVEMILQQHRMMSTMAKSAM 452
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR541_SOLLC (Signal recognition particle 54 kDa protein 1 OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.073e-11 Identity = 47/159 (29.56%), Postives = 82/159 (51.57%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIME--AMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNL 458 M++ E F R+LGMGD+ V K Q+V+ + E+ +K+ +F +Q +++ +MG + V M+PG Q RE E K M+++MT EE + P++L ES R R+A+ SG+ +V +++ + L ++ +MK L Sbjct: 280 MDEFEVFDVKPFVSRLLGMGDLSGLVNKIQDVVPMDQQPELLQKLSEGHFTLRIMYEQFQSMLKMGPLG-VFSMLPGFSAEMMPQGREKESQAKFKRYMTMMDSMTDEELDSTNPKILTES--RIMRIARGSGRLVHEVMEMLEEYKRLAKIFSKMKGL 435
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SRP54_YARLI (Signal recognition particle 54 kDa protein homolog OS=Yarrowia lipolytica GN=SRP54 PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11 Identity = 45/156 (28.85%), Postives = 80/156 (51.28%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITPAQVREAEKSLKIMEAMIEAMTPEEREKP-ELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMG 464 + DLE F P + ++LG+GD+ +E Q + D ++ + I F D Q + +MGS+S + GMIPG+ G + E + +K M ++++M +E + + E P R RVA+ SG + ++V +++ Q +M M + MG Sbjct: 281 IHDLEAFSPKQFISKLLGIGDLQGLMETMQSL--NLDQKKTMEHIQEGIFTLADLRDQMGNMLKMGSLSSIAGMIPGLSGMASSISDEEGTRRIKRMIYILDSMNQKELDSDGSIFKEVPSRITRVARGSGTSIREVEEVLQQQ-KMMASMASRMG 433
BLAST of CX300149 vs. ExPASy Swiss-Prot
Match: SR542_ARATH (Signal recognition particle 54 kDa protein 2 OS=Arabidopsis thaliana GN=SRP-54B PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 7.876e-11 Identity = 42/159 (26.42%), Postives = 81/159 (50.94%), Query Frame = 3 Query: 3 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGM-GKITP-AQVREAEKSLKIMEAMIEAMTPEERE--KPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGV 467 M++ E F R+LG GD+ FV K QEV+ ++ E+ + + F Q + + MG + V M+PGM ++ P +E++ +K M+++MT EE + P++ ES R R+A+ SG+ ++V +++ + ++ + G+ Sbjct: 279 MDEFEVFDAKPFVSRLLGNGDMSGFVNKLQEVVPKDQQPELLEMLSHGKFTLRIMYDQFQNMLNMGPLKEVFSMLPGMRAEMMPEGHEKESQAEIKRYMTMMDSMTNEELDSSNPKVFNES--RIMRIARGSGRIVREVMEMLEEYKRLTTMWGKVKGL 435 The following BLAST results are available for this feature:
BLAST of CX300149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 97
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300149 ID=CX300149; Name=CX300149; organism=Citrus clementina; type=EST; length=472bpback to top |