CX300153

Overview
NameCX300153
Unique NameCX300153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_PROMS (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain AS9601) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_PROM9 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpmE PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_PROM2 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_PROM0 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.765e-14
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K +IHP++Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTQPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_TRIEI (50S ribosomal protein L31 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 300
            K DIHP++Y +AKVYCNGE+VMT G TQ E  VDVWSGNH ++ G +  +  +  +VE+F +K+
Sbjct:    3 KADIHPEWYPEAKVYCNGEVVMTVGSTQPEIHVDVWSGNHPYFTGTQKIIDTEG-RVERFMRKY 65          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_PROMT (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain NATL2A) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.305e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K DIHP +Y +AKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_SYNPW (50S ribosomal protein L31 OS=Synechococcus sp. (strain WH7803) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.932e-14
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K +IHP +Y DAKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPEIHPTWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_PROMP (50S ribosomal protein L31 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_PROM5 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.135e-14
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K +IHP++Y DAKV CNGE+VMTTG T+ E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KSEIHPKWYPDAKVICNGEVVMTTGSTKPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMKKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_SYNR3 (50S ribosomal protein L31 OS=Synechococcus sp. (strain RCC307) GN=rpmE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K DIHP +Y DAKV CNGE+VMTTG T  E  VDVWSGNH F+ G +  +  +  +V++F +K+G
Sbjct:    3 KPDIHPTWYPDAKVICNGEVVMTTGSTTPELHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
The following BLAST results are available for this feature:
BLAST of CX300153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL31_PROMS1.765e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM91.765e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM21.765e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM01.765e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_TRIEI2.305e-1453.1350S ribosomal protein L31 OS=Trichodesmium erythra... [more]
RL31_PROMT2.305e-1453.8550S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNPW3.932e-1453.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_PROMP5.135e-1452.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_PROM55.135e-1452.3150S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_SYNR36.707e-1453.8550S ribosomal protein L31 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC07006G10SK SaltLeaf1 Citrus clementina cDNA clone C07006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300153 ID=CX300153; Name=CX300153; organism=Citrus clementina; type=EST; length=447bp
AACACATTCTTCCAAATCAAACCCTCTGCTCCAATTCTCCCCACCAGAAA
GGTGAAGAACTGTGCAGCAACGGGCAGTGGTTACAGGACCCGGGTGGTGA
CGTGTCGAAAGAAGGACATACACCCTCAATTCTACGAGGATGCAAAGGTG
TACTGTAACGGTGAGCTCGTAATGACGACGGGTGGGACCCAGAAGGAGTA
CGTGGTGGATGTCTGGTCGGGAAACCATGCGTTTTACCTCGGCGGCCGCT
CTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAAGTTCCGTCAGAAGTTC
GGAGGATTGTCTGAGATTATGGAAATTCCCGTGCTTAAAGGAGAGATTGT
GTTGCCGCCTAAGCGCAAGTCCGCGGCCTCTAAAGGTGGCAAGAAGAAGT
AAAAATTTGGTACGACGTTGTTTTTGAGGTAATTGGGGAATGTTTGT
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