CX300153

Overview
NameCX300153
Unique NameCX300153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RK31_GUITH (50S ribosomal protein L31, chloroplastic OS=Guillardia theta GN=rpl31 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.707e-14
Identity = 31/65 (47.69%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K+++HP++Y +AKVYC+G+L+MT G T+ E  VD+WSGNH FY G +  +  +  +VE+F +K+G
Sbjct:    3 KQNLHPKWYAEAKVYCDGQLIMTIGSTKSELNVDIWSGNHPFYTGSQKMLDTEG-RVERFMRKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RK31_CYACA (50S ribosomal protein L31, chloroplastic OS=Cyanidium caldarium GN=rpl31 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.759e-14
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFGGLSEIME 324
            KK+IHPQ+YE+AK YCNGE+V   G T+ E   D+WSGNH FY+G +  V  +  +++KF +K+   SE  E
Sbjct:    3 KKNIHPQWYEEAKFYCNGEIVKIIGSTRMEINADIWSGNHPFYIGTQKIVDTEG-RIDKFIRKYNLNSENSE 73          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_PROM1 (50S ribosomal protein L31 OS=Prochlorococcus marinus (strain NATL1A) GN=rpmE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 300
            K DIHP +Y +AKV CNGE+VMTTG TQ E  VDVWSGNH F+ G +  +  +  +V++F +K+
Sbjct:    3 KSDIHPTWYPEAKVICNGEVVMTTGATQPEIQVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKY 65          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_CYAP7 (50S ribosomal protein L31 OS=Cyanothece sp. (strain PCC 7424) GN=rpmE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K DIHP +Y +AKV CNGE+VMT G TQ E  V+VWSGNH FY G +  +  +  +V++F +K+G
Sbjct:    3 KADIHPTWYPEAKVICNGEVVMTVGSTQPEIHVEVWSGNHPFYTGTQKMIDTEG-RVDRFLRKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RL31_SYNY3 (50S ribosomal protein L31 OS=Synechocystis sp. (strain PCC 6803) GN=rpmE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKFG 303
            K DIHP +Y DAKV CNGE++MT G T+ E  V++WSGNH FY G +  +  +  +V++F +K+G
Sbjct:    3 KADIHPTWYPDAKVTCNGEVIMTVGSTKPEINVEIWSGNHPFYTGTQKIIDTEG-RVDRFMRKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RK31_PORPU (50S ribosomal protein L31, chloroplastic OS=Porphyra purpurea GN=rpl31 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.328e-13
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 300
            K DIHP +Y DAKVYC+G+L+MT G T+ E  VD+WSGNH F+ G +  +  +  +VE+F +K+
Sbjct:    3 KVDIHPIWYPDAKVYCDGQLIMTIGSTKPELHVDIWSGNHPFFTGSQRIIDTEG-RVERFMRKY 65          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RK31_PORYE (50S ribosomal protein L31, chloroplastic OS=Porphyra yezoensis GN=rpl31 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.265e-12
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 300
            K +IHP +Y +AKVYC+G+L+MT G T+ E  VD+WSGNH F+ G +  +  +  +VE+F +K+
Sbjct:    3 KDNIHPNWYPEAKVYCDGQLIMTIGSTKPELHVDIWSGNHPFFTGSQRIIDTEG-RVERFMRKY 65          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RK31_GRATL (50S ribosomal protein L31, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl31 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.265e-12
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 300
            +K IHP+++ D KVYC+G+ VMT G TQ E  VD+WSGNH F+ G +  +  +  +VEKF +K+
Sbjct:    3 QKSIHPKWFNDTKVYCDGKHVMTVGSTQAELHVDIWSGNHPFFTGSQRIIDTEG-RVEKFMRKY 65          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RK31_EMIHU (50S ribosomal protein L31, chloroplastic OS=Emiliania huxleyi GN=rpl31 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.265e-12
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  109 KKDIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDAD-QVEKFRQKFG 303
            K  IHP +Y +AKVYC+G+LVM  G T+    VD+WSGNH FY G  S  ++D + +VE+F +K+G
Sbjct:    3 KSAIHPDWYPNAKVYCDGQLVMKVGATKPTLNVDIWSGNHPFYTG--SQTIIDTEGRVERFMRKYG 66          
BLAST of CX300153 vs. ExPASy Swiss-Prot
Match: RK31_PALPL (50S ribosomal protein L31, chloroplastic OS=Palmaria palmata GN=rpl31 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.818e-12
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  115 DIHPQFYEDAKVYCNGELVMTTGGTQKEYVVDVWSGNHAFYLGGRSAVVVDADQVEKFRQKF 300
            DIHP++Y D+KVYC+G+ +MT G T+ E  VD+WSGNH F+ G +  +  +  +VE+F +K+
Sbjct:    5 DIHPEWYNDSKVYCDGKHIMTIGSTKPELHVDIWSGNHPFFTGSQRIIDTEG-RVERFMRKY 65          
The following BLAST results are available for this feature:
BLAST of CX300153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RK31_GUITH6.707e-1447.6950S ribosomal protein L31, chloroplastic OS=Guilla... [more]
RK31_CYACA8.759e-1448.6150S ribosomal protein L31, chloroplastic OS=Cyanid... [more]
RL31_PROM11.144e-1353.1350S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_CYAP71.144e-1352.3150S ribosomal protein L31 OS=Cyanothece sp. (strai... [more]
RL31_SYNY31.951e-1349.2350S ribosomal protein L31 OS=Synechocystis sp. (st... [more]
RK31_PORPU3.328e-1350.0050S ribosomal protein L31, chloroplastic OS=Porphy... [more]
RK31_PORYE1.265e-1246.8850S ribosomal protein L31, chloroplastic OS=Porphy... [more]
RK31_GRATL1.265e-1248.4450S ribosomal protein L31, chloroplastic OS=Gracil... [more]
RK31_EMIHU1.265e-1250.0050S ribosomal protein L31, chloroplastic OS=Emilia... [more]
RK31_PALPL2.818e-1246.7750S ribosomal protein L31, chloroplastic OS=Palmar... [more]

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Properties
Property NameValue
Genbank descriptionC07006G10SK SaltLeaf1 Citrus clementina cDNA clone C07006G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300153 ID=CX300153; Name=CX300153; organism=Citrus clementina; type=EST; length=447bp
AACACATTCTTCCAAATCAAACCCTCTGCTCCAATTCTCCCCACCAGAAA
GGTGAAGAACTGTGCAGCAACGGGCAGTGGTTACAGGACCCGGGTGGTGA
CGTGTCGAAAGAAGGACATACACCCTCAATTCTACGAGGATGCAAAGGTG
TACTGTAACGGTGAGCTCGTAATGACGACGGGTGGGACCCAGAAGGAGTA
CGTGGTGGATGTCTGGTCGGGAAACCATGCGTTTTACCTCGGCGGCCGCT
CTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAAGTTCCGTCAGAAGTTC
GGAGGATTGTCTGAGATTATGGAAATTCCCGTGCTTAAAGGAGAGATTGT
GTTGCCGCCTAAGCGCAAGTCCGCGGCCTCTAAAGGTGGCAAGAAGAAGT
AAAAATTTGGTACGACGTTGTTTTTGAGGTAATTGGGGAATGTTTGT
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