CX300163

Overview
NameCX300163
Unique NameCX300163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_SHIBS (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 4 (strain Sb227) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_SHIB3 (L-lactate dehydrogenase [cytochrome] OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_PSEU2 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 52/158 (32.91%), Postives = 69/158 (43.67%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTG-----------SNFEADAN----------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATISA 402
            K R      ++RA+  G   LV T D P  G R  D  + M  P   P + L+ +     + + G           S +   A              D S+SWKDLEW+R     P++IKGIL  +DA  A      GI+VSNHG RQLD   +T  A
Sbjct:  132 KDRGFMKNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPYAAPRRILQAMTKPDWALNVGLLGRPHDLGNISRYLGKATTLEDYVGWLANNFDPSISWKDLEWIREFWQGPMIIKGILDPQDARDALSFGADGIVVSNHGGRQLDGVLSTAKA 289          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSM (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_ECOSE (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli (strain SE11) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: LLDD_ECOLU (L-lactate dehydrogenase [cytochrome] OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.806e-12
Identity = 49/150 (32.67%), Postives = 66/150 (44.00%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPL---KNLEGLLSTKVSSDTGSN---------------------FEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLD 378
            + R      ++RA+  G   LV T D P  G R  D  + M  P     + L+ +   + + D G N                     +        D S+SWKDLEW+R   + P++IKGIL  EDA  A      GI+VSNHG RQLD
Sbjct:  132 RDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLD 281          
The following BLAST results are available for this feature:
BLAST of CX300163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LLDD_SHISS1.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL1.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF81.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS1.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]
LLDD_SHIBS1.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_SHIB31.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Shigella b... [more]
LLDD_PSEU21.806e-1232.91L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ECOSM1.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOSE1.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]
LLDD_ECOLU1.806e-1232.67L-lactate dehydrogenase [cytochrome] OS=Escherichi... [more]

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Properties
Property NameValue
Genbank descriptionC07007A02SK SaltLeaf1 Citrus clementina cDNA clone C07007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300163 ID=CX300163; Name=CX300163; organism=Citrus clementina; type=EST; length=403bp
AAGAAACGAGATATAACAGCTACTCTAGTGCAGAGAGCTGAAAGGAATGG
TTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAGACTTGGTAGAAGGG
AGGCAGATATAAAGAACAAAATGATTACACCGCCGTTGAAGAATTTGGAA
GGCCTCTTATCAACCAAAGTCAGCTCTGATACAGGTTCAAATTTTGAAGC
TGATGCCAATGAGACCATGGATGCTTCTTTAAGTTGGAAGGATTTAGAAT
GGCTAAGATCTATTACAAACTTACCAATTTTGATCAAGGGGATACTTACT
CGTGAAGATGCAATAAAAGCTGCGGAAAGACGTGAAGCTGGGATTATTGT
CTCCAATCACGGAGCTCGACAGTTAGATTATAGTCCTGCCACTATTTCTG
CTC
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