CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 86/117 (73.50%), Postives = 99/117 (84.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL 351
            GKTEL+KALA ++F  E A+VRIDMSEYMEKH++ RLIGAPPGYVGY+E GQLTE VRRRPY V+L DEI+KAH+DVFNV+L  LDDGR+TDSQG T  F N VIIMTSN+GS  IL
Sbjct:  617 GKTELAKALASFLFDDENAMVRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGQLTEAVRRRPYAVVLFDEIEKAHNDVFNVLLQVLDDGRITDSQGRTIDFKNAVIIMTSNIGSDAIL 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 86/119 (72.27%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL+KALA ++F + +A+VRIDMSEYMEKH + RLIGAPPGYVG+EE GQLTE VRRRPY VIL DEI+KAH DVFNV+L  LDDGR+TD QG T  F NT+IIMTSN+GS  IL+M
Sbjct:  600 GKTELAKALAEFLFDSSDAMVRIDMSEYMEKHTVARLIGAPPGYVGFEEGGQLTEAVRRRPYAVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNIGSPLILEM 718          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K LA  +F +EE ++RIDMSEYMEKHA+ RLIGAPPGYVGYEE GQLTE VRR+PY VIL DEI+KAH +VFN++L  LDDGR+TDSQG T  F NTVIIMTSN+GS ++LD
Sbjct:  616 GKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLD 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.939e-43
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K LA  +F +EE ++RIDMSEYMEKHA+ RLIGAPPGYVGYEE GQLTE VRR+PY VIL DEI+KAH +VFN++L  LDDGR+TDSQG T  F NTVIIMTSN+GS ++LD
Sbjct:  616 GKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLD 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.532e-43
Identity = 83/122 (68.03%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL+KALAF MF +E+ ++RIDMSEYMEKH++ RL+GAPPGYVGYEE GQLTE VRR PY ++L DEI+KAH DVFN++L  LDDGR+TDSQG    F NTVIIMTSN+GS  +L+  +E
Sbjct:  616 GKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEE 737          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 173.711 bits (439), Expect = 2.532e-43
Identity = 84/118 (71.19%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+KALA  +F +EE +VRIDMSEYMEKH++ RL+GAPPGYVGY+E GQLTE VRR PY +IL DEI+KAH DVFN++L  LDDGR+TDS+G+   F NTV+IMTSNVGSQY+LD
Sbjct:  613 GKTELAKALAENLFDSEEHMVRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPDVFNILLQVLDDGRLTDSKGVLVDFKNTVLIMTSNVGSQYLLD 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_LACLA (Chaperone protein clpB OS=Lactococcus lactis subsp. lactis GN=clpB PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.532e-43
Identity = 84/118 (71.19%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+KALA  +F +EE +VRIDMSEYMEKH++ RL+GAPPGYVGY+E GQLTE VRR PY +IL DEI+KAH DVFN++L  LDDGR+TDS+G+   F NTV+IMTSNVGSQY+LD
Sbjct:  613 GKTELAKALAENLFDSEEHMVRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPDVFNILLQVLDDGRLTDSKGVLVDFKNTVLIMTSNVGSQYLLD 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.532e-43
Identity = 84/118 (71.19%), Postives = 100/118 (84.75%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K LA  +F +EE ++RIDMSEYMEKHA+ RLIGAPPGYVGYEE GQLTE VRR+PY V+L DEI+KAH +VFN++L  LDDGR+TDSQG T  F NTVIIMTSN+GS ++LD
Sbjct:  616 GKTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLD 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.308e-43
Identity = 82/122 (67.21%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL+KALAF MF +E+ ++RIDMSEYMEKH++ RL+GAPPGY+GYEE GQLTE VRR PY ++L DEI+KAH DVFN++L  LDDGR+TDSQG    F NTVIIMTSN+GS  +L+  +E
Sbjct:  616 GKTELAKALAFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYIGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEE 737          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.320e-43
Identity = 85/121 (70.25%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL++ LA ++F  E+AL RIDMSEYMEKH++ RLIGAPPGYVGY+E GQLTE VRRRPY VIL DEI+KAH DVFNV L  LDDGR+TD QG    F NT+IIMTSN+GS+YIL   D
Sbjct:  614 GKTELARTLADFLFNDEKALTRIDMSEYMEKHSVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHQDVFNVFLQILDDGRLTDGQGRVVDFKNTIIIMTSNIGSEYILTAKD 734          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_GLOVI1.939e-4373.50Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_DEIRA1.939e-4372.27Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_BACC11.939e-4372.03Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BACAN1.939e-4372.03Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]
CLPB_LISMF2.532e-4368.03Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_LACLM2.532e-4371.19Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_LACLA2.532e-4371.19Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_BACCR2.532e-4371.19Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_LISMO3.308e-4367.21Chaperone protein clpB OS=Listeria monocytogenes G... [more]
CLPB_TREDE4.320e-4370.25Chaperone protein clpB OS=Treponema denticola GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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