CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.959e-40
Identity = 77/116 (66.38%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GK+EL+KALA Y F +EEA++R+DMSE+ME+H + +LIG+PPGYVGY E GQLTE VRRRPY V+L DEI+KAH DVFN++L  L+DGR+TDS+G T  F NT++IMTSNVGS  I
Sbjct:  648 GKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 763          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PARUW (Chaperone protein clpB OS=Protochlamydia amoebophila (strain UWE25) GN=clpB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.959e-40
Identity = 75/118 (63.56%), Postives = 96/118 (81.36%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+KALAF +F  +EAL+R+DMSEYMEKH + +LIG+PPGY+GYEE GQLTE +RRRPY V+L DEI+KAH DVFN++L   DDGR+TDS+G   +  N + IMTSN+GS  +L+
Sbjct:  611 GKTELAKALAFQLFNQDEALIRLDMSEYMEKHTVSKLIGSPPGYIGYEEGGQLTEALRRRPYAVVLFDEIEKAHPDVFNILLQVFDDGRLTDSKGRVVNCKNALFIMTSNIGSDLLLE 728          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_HELHP (Chaperone protein clpB OS=Helicobacter hepaticus GN=clpB PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.959e-40
Identity = 73/122 (59.84%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKT+ +K LA ++F   ++LVRIDMSEYMEKHA+ RL+GAPPGYVGYEE G LTE +RR+PY ++L DE++KAH DVFN++L  LDDGR+TDS+G++  F+NT+II+TSN+ S  I+++ D+
Sbjct:  612 GKTQCAKTLAEFLFDNAKSLVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGVLTEAIRRKPYSIVLFDEVEKAHPDVFNILLQVLDDGRLTDSKGVSVDFSNTIIILTSNIASDKIMEIGDK 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.959e-40
Identity = 77/116 (66.38%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GK+EL+KALA Y F +EEA++R+DMSE+ME+H + +LIG+PPGYVGY E GQLTE VRRRPY V+L DEI+KAH DVFN++L  L+DGR+TDS+G T  F NT++IMTSNVGS  I
Sbjct:  648 GKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 763          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 80/117 (68.38%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL 351
            GKTEL+KALA  +F  E  LVRIDMSEYME+H++ RLIGAPPGYVG+EE GQLTE VRRRPY VIL DE++KAH  VFN +L  LDDGR+TD QG T  F N+VIIMTSN+G++++L
Sbjct:  611 GKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYCVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVDFRNSVIIMTSNLGAEHLL 727          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 78/118 (66.10%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  E+A++R+DMSE+MEKHA+ RL+GAPPGYVG++E GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G    F NTVIIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDEGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQVDFRNTVIIMTSNVGAQELQD 667          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 77/118 (65.25%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NTVIIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQD 667          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 77/118 (65.25%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NTVIIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQD 667          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTELSK+LA  +F +E+A++RIDMSEYMEKH+I RLIGAPPGYVGYE  GQL+E VRR PY VIL DE++KA+SDV N++L  LD+GR+TD +G   +F NT+II+TSNVGS+ I++M ++
Sbjct:  617 GKTELSKSLAKELFDSEKAMIRIDMSEYMEKHSISRLIGAPPGYVGYESGGQLSEAVRRNPYSVILFDEVEKANSDVLNIMLQILDEGRLTDGKGKNINFKNTIIILTSNVGSESIIEMTNK 738          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BIFLO (Chaperone protein clpB OS=Bifidobacterium longum GN=clpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 77/120 (64.17%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMD 360
            GKTEL+KALA ++F  E+A+VRIDMSEYMEK ++ RLIGA PGYVGYE+ GQLTE VRRRPY V+L DE++KA+ ++F+V+L  LDDGR+TD QG T  F NT++IMTSN+GSQ++++ D
Sbjct:  621 GKTELAKALADFLFDDEKAMVRIDMSEYMEKASVSRLIGAAPGYVGYEQGGQLTEAVRRRPYSVVLFDEVEKANPEIFDVLLQVLDDGRLTDGQGRTVDFKNTILIMTSNLGSQFLVNED 740          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPC_PEA9.959e-4066.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PARUW9.959e-4063.56Chaperone protein clpB OS=Protochlamydia amoebophi... [more]
CLPB_HELHP9.959e-4059.84Chaperone protein clpB OS=Helicobacter hepaticus G... [more]
CLPAB_SOLLC9.959e-4066.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
HS101_ARATH1.699e-3968.38Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
CLPC_STAHJ1.699e-3966.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAES1.699e-3965.25ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ1.699e-3965.25ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PROMA1.699e-3963.93Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_BIFLO1.699e-3964.17Chaperone protein clpB OS=Bifidobacterium longum G... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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