CX300169 | Citrus Genome Database

Overview


Name	CX300169
Unique Name	CX300169
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	367

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.699e-39
Identity = 82/126 (65.08%), Postives = 100/126 (79.37%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL----DMDDE 366
            GKTELSKALA  +F  E+AL+R+DMSE+ E+H++ +LIGAPPGYVGYEE G+LTE VRR+PY VIL DEI+KAH  V ++ L  LDDGR+TDS G T  F NTVIIMTSN+GSQY+L    D D+E
Sbjct:  731 GKTELSKALAELLFGDEDALIRLDMSEFKEEHSVAKLIGAPPGYVGYEEGGKLTEAVRRKPYSVILLDEIEKAHPRVLDLFLQVLDDGRLTDSHGRTVDFRNTVIIMTSNIGSQYLLNIPVDADEE 856

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAAM (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpC PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAAC (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAAB (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/118 (64.41%), Postives = 99/118 (83.90%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667

[Close]

BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 76/116 (65.52%), Postives = 97/116 (83.62%), Query Frame = 1

Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GK+EL+K+LA Y F +EEA++R+DMSE+ME+H + +LIG+PPGYVGY E GQLTE VRRRPY V+L DEI+KAH DVFN++L  L+DGR+TDS+G T  F NT++IMTSNVGS  I
Sbjct:  651 GKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVI 766

The following BLAST results are available for this feature:

BLAST of CX300169 vs. ExPASy Swiss-Prot

BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200


Match Name	E-value	Identity	Description
CLPB_AQUAE	1.699e-39	65.08	Chaperone protein clpB OS=Aquifex aeolicus GN=clpB...	[more]
CLPC_STAAS	2.219e-39	64.41	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPC_STAAR	2.219e-39	64.41	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPC_STAAN	2.219e-39	64.41	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPC_STAAM	2.219e-39	64.41	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPC_STAAC	2.219e-39	64.41	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPC_STAAB	2.219e-39	64.41	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPC_STAA8	2.219e-39	64.41	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPC_STAA3	2.219e-39	64.41	ATP-dependent Clp protease ATP-binding subunit clp...	[more]
CLPAA_SOLLC	2.219e-39	65.52	ATP-dependent Clp protease ATP-binding subunit clp...	[more]

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Properties


Property Name	Value
Genbank description	C07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA