CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 2.898e-39
Identity = 78/118 (66.10%), Postives = 96/118 (81.36%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKT L+K LA+ +F +E+ +VRIDMSEYM+K ++ RLIGAPPGYVGYEE GQLTE +R +PY VIL DEI+KAH DVFNV+L  LDDGR+TD QG    F NT+IIMTSN+GS +IL+
Sbjct:  611 GKTYLAKTLAYNLFDSEDNVVRIDMSEYMDKFSVTRLIGAPPGYVGYEEGGQLTEAIRTKPYSVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRIVDFKNTLIIMTSNIGSHFILE 728          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_LACPL (Chaperone protein clpB OS=Lactobacillus plantarum GN=clpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.942e-39
Identity = 78/123 (63.41%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL-DMDDE 366
            GKTEL+KALA  +F  ++ +VRIDMSEYMEK ++ RL+GA PGYVGYEE GQLTE VRR PY ++L DEI+KAH DVFN++L  LDDGR+TD QG T  F NT++IMTSN+GS+ +L  +DD+
Sbjct:  612 GKTELAKALAENLFDADDHMVRIDMSEYMEKESVSRLVGAAPGYVGYEEGGQLTEAVRRNPYSIVLFDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTILIMTSNLGSELLLAGVDDQ 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.942e-39
Identity = 75/113 (66.37%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL+KALA +MF  + A+VRIDMSEY EKHA+ RL+GAPPGYVGY++ GQLTE VRRRPY V+L DE++KAH DVF+++L  LD+GR+TD QG T  F NTV+I+TSN+G+
Sbjct:  611 GKTELAKALAEFMFDDDRAMVRIDMSEYGEKHAVARLVGAPPGYVGYDQGGQLTEAVRRRPYTVVLFDEVEKAHPDVFDILLQVLDEGRLTDGQGRTVDFRNTVLILTSNLGA 723          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLP_TRYBB (Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.455e-39
Identity = 74/121 (61.16%), Postives = 103/121 (85.12%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL KA+A  +F  E+ +VRIDMSEYME+H++ RLIGAPPGY+G++E GQLTE VRRRP+ V+L DE++KAH +V+NV+L  LDDGR+TDS+G T  F+NT+I+MTSN+GS+++L+ ++
Sbjct:  608 GKTELVKAVAAELFDDEKHMVRIDMSEYMEQHSVSRLIGAPPGYIGHDEGGQLTEPVRRRPHAVVLFDEVEKAHPNVYNVLLQVLDDGRLTDSRGRTVDFSNTIIVMTSNLGSEHLLNPEE 728          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.431e-39
Identity = 76/118 (64.41%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAPPGYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G    F NTVIIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRRVDFRNTVIIMTSNVGAQELQD 667          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPA (Chaperone protein clpB OS=Mycobacterium paratuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.101e-38
Identity = 75/113 (66.37%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL+KALA ++F  + A+VRIDMSEY EKH++ RL+GAPPGY+GY++ GQLTE VRRRPY VIL DEI+KAH DVF+V+L  LD+GR+TD QG T  F NT++I+TSN+GS
Sbjct:  612 GKTELAKALADFLFDDKRAMVRIDMSEYGEKHSVARLVGAPPGYIGYDQGGQLTEAVRRRPYTVILFDEIEKAHPDVFDVLLQVLDEGRLTDGQGRTVDFRNTILILTSNLGS 724          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.101e-38
Identity = 76/116 (65.52%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL + LA ++F +EE +VRIDMSE+MEKH++ RLIGAPPGYVGY++ G LTE VRR+PY V+L DE++KAHSDVFN +L  LD+GR+TD QG T  F +TVIIMTSN+GS  I
Sbjct:  615 GKTELCRTLAQFLFDSEENMVRIDMSEFMEKHSVARLIGAPPGYVGYDQGGYLTEAVRRKPYSVVLFDEVEKAHSDVFNTLLQVLDEGRLTDGQGRTVDFRHTVIIMTSNLGSDMI 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 75/113 (66.37%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL++ALA  +F  EE+++RIDMSEYMEKH+  RL+G+PPGYVGY+E GQLTE VRR+PY V+L DEI+KAH DVFN++L  L+DGR+TDS+G T  F NT++IMTSNVG+
Sbjct:  550 GKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 662          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL+KALA ++F  E A+VRIDMSEY EKH + RLIGAPPGYVGYE  GQLTE VRRRPY V+L DEI+KAH DVF+V+L  LD+GR+TD  G T  F NT++I+TSN+GS
Sbjct:  612 GKTELAKALADFLFDDERAMVRIDMSEYGEKHTVARLIGAPPGYVGYEAGGQLTEAVRRRPYTVVLFDEIEKAHPDVFDVLLQVLDEGRLTDGHGRTVDFRNTILILTSNLGS 724          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL+KALA ++F  E A+VRIDMSEY EKH + RLIGAPPGYVGYE  GQLTE VRRRPY V+L DEI+KAH DVF+V+L  LD+GR+TD  G T  F NT++I+TSN+GS
Sbjct:  612 GKTELAKALADFLFDDERAMVRIDMSEYGEKHTVARLIGAPPGYVGYEAGGQLTEAVRRRPYTVVLFDEIEKAHPDVFDVLLQVLDEGRLTDGHGRTVDFRNTILILTSNLGS 724          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_FUSNN2.898e-3966.10Chaperone protein clpB OS=Fusobacterium nucleatum ... [more]
CLPB_LACPL4.942e-3963.41Chaperone protein clpB OS=Lactobacillus plantarum ... [more]
CLPB_CORDI4.942e-3966.37Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLP_TRYBB6.455e-3961.16Heat shock protein 100 OS=Trypanosoma brucei bruce... [more]
CLPC_STAS18.431e-3964.41ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_MYCPA1.101e-3866.37Chaperone protein clpB OS=Mycobacterium paratuberc... [more]
CLPB_DICNO1.101e-3865.52Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]
CLPC_BACSU1.438e-3866.37Negative regulator of genetic competence clpC/mecB... [more]
CLPB_MYCTU1.438e-3868.14Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO1.438e-3868.14Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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