CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_CAMJE (Chaperone protein clpB OS=Campylobacter jejuni GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 72/119 (60.50%), Postives = 99/119 (83.19%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKT+ +KALA ++F  E+A++R DMSE+MEKH++ RL+GAPPGY+G+EE G+LTE VRR+PY V+L DE++KAH DVFNV+L  LDDGR TDS+G+T  F NT+II+TSN+ S  I+++
Sbjct:  613 GKTQSAKALAKFLFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASNAIMNL 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.878e-38
Identity = 73/116 (62.93%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+KAL+ YMF  E++++R+DMSEYMEKH + +LIG+PPGYVGY E GQLTE V+ +PY V+L DE++KAH DVFN++L  LDDGR+TDS+G T  F NT+IIMT+N+G++ I
Sbjct:  565 GKTELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEGGQLTEAVQTKPYSVVLLDEVEKAHPDVFNLLLQILDDGRLTDSKGRTIDFRNTMIIMTTNLGAKII 680          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.878e-38
Identity = 75/113 (66.37%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL++ALA  MF  E+A++RIDMSEYME+HA  RL+G+PPGYVGY+E GQLTE VRR+PY V+L DE++KAH +VFN++L  L+DGR+TDS+G    F NTVIIMTSNVG+
Sbjct:  553 GKTELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSNVGA 665          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPN (Chaperone protein clpB OS=Mycoplasma pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.453e-38
Identity = 75/118 (63.56%), Postives = 96/118 (81.36%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F  E+A++R DMSEYMEKH++ +LIGAPPGYVGYE+ G LTE VRR+PY V+L DEI+KAH DV N++L  LDDG + DSQG   +F NT+IIMTSN+GS YI++
Sbjct:  471 GKTELAKSLAEVLFDNEKAMIRFDMSEYMEKHSVAKLIGAPPGYVGYEQSGLLTEAVRRKPYCVLLFDEIEKAHPDVTNILLQVLDDGTLKDSQGRLVNFKNTMIIMTSNLGSNYIME 588          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.453e-38
Identity = 74/116 (63.79%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL KAL+ ++F T+ A+VRIDMSE+MEKH++ +L+GAPPGY+GYE    LTE +RRRPY ++L DEI+KAH DVFN++L  LDDGR+TD+QG    F NTVIIMTSN+GS  I
Sbjct:  612 GKTELCKALSQFLFDTDNAMVRIDMSEFMEKHSVSKLLGAPPGYIGYESGAYLTESIRRRPYSIVLLDEIEKAHLDVFNILLQVLDDGRLTDNQGRMVDFNNTVIIMTSNLGSDLI 727          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 75/118 (63.56%), Postives = 98/118 (83.05%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL++ALA  MF  ++A++R+DMSE+MEKHA+ RL+GAP GYVG+++ GQLTE VRR+PY VIL DEI+KAH DVFN++L  LDDG +TD++G T  F NT+IIMTSNVG+Q + D
Sbjct:  550 GKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAPLGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQD 667          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_HELPJ (Chaperone protein clpB OS=Helicobacter pylori J99 GN=clpB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 76/120 (63.33%), Postives = 98/120 (81.67%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMD 360
            GKTE +KALA ++F +++ L+RIDMSEYMEKHAI RLIGA PGYVGYEE GQLTE VRR+PY V+L DE++KAH DVFN++L  LD+G +TDS+G+   F NT++I+TSNV S  +L+ D
Sbjct:  610 GKTESAKALAQFLFDSDKNLIRIDMSEYMEKHAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGALLEED 729          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_MYCGE (Chaperone protein clpB OS=Mycoplasma genitalium GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 75/118 (63.56%), Postives = 96/118 (81.36%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F  E+AL+R DMSEYMEKH++ +LIGAPPGY+GYE+ G LTE VRR+PY V+L DEI+KAH DV NV+L  LDDG + DSQG   +F NT+IIMTSN+GS ++L+
Sbjct:  471 GKTELAKSLAEVLFDNEKALIRFDMSEYMEKHSVAKLIGAPPGYIGYEQSGLLTEAVRRKPYSVLLFDEIEKAHPDVTNVLLQVLDDGTLKDSQGRVVNFKNTLIIMTSNLGSNFLLE 588          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 71/113 (62.83%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL+KA++ ++F  E A+VRIDMSEY EKH++ RL+GAPPGYVGY++ GQLTE VRRRPY  +L DE++KAH DVF+++L  LDDGR+TD QG T  F NT++I+TSN+G+
Sbjct:  613 GKTELAKAVSEFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYDQGGQLTEAVRRRPYTTVLFDEVEKAHPDVFDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGA 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 72/116 (62.07%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+KALA Y F +E +++R+DMSEYME+H + +LIG+PPGYVGY E G LTE VR++PY VIL DEI+KAH D+FN++L  L+DGR+TD++G T  F NT++IMTSN+GS+ I
Sbjct:  554 GKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVI 669          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_CAMJE1.438e-3860.50Chaperone protein clpB OS=Campylobacter jejuni GN=... [more]
CLPC_ODOSI1.878e-3862.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_OCEIH1.878e-3866.37Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPB_MYCPN2.453e-3863.56Chaperone protein clpB OS=Mycoplasma pneumoniae GN... [more]
CLPB_BLOFL2.453e-3863.79Chaperone protein clpB OS=Blochmannia floridanus G... [more]
CLPC_STAAW3.204e-3863.56ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_HELPJ3.204e-3863.33Chaperone protein clpB OS=Helicobacter pylori J99 ... [more]
CLPB_MYCGE4.184e-3863.56Chaperone protein clpB OS=Mycoplasma genitalium GN... [more]
CLPB_COREF4.184e-3862.83Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPC_PORYE5.465e-3862.07ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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