CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPE_BACSU (ATP-dependent Clp protease ATP-binding subunit clpE OS=Bacillus subtilis GN=clpE PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 73/113 (64.60%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTELSK LA  +F T++A++R+DMSEYMEKHA+ ++IG+PPGYVG+EE GQLTE VRR PY ++L DEI+KAH DV ++ L  ++DGR+TDSQG T SF +TVIIMTSN G+
Sbjct:  451 GKTELSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGHEEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGA 563          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIN (Chaperone protein clpB OS=Leptospira interrogans GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTE +KALA ++F    A+ RIDMSEYME H++ RLIGAPPGYVGY+E GQLTE VRRRPY +IL DEI+KA+ +VFN+ L  LD+GR+TD +G    F NTVII+TSN+GS+ +
Sbjct:  615 GKTETAKALAEFLFDDVNAMTRIDMSEYMEAHSVARLIGAPPGYVGYDEGGQLTEAVRRRPYSLILFDEIEKANPEVFNIFLQILDEGRLTDGKGRNVDFKNTVIILTSNIGSEVL 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIC (Chaperone protein clpB OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 73/116 (62.93%), Postives = 92/116 (79.31%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTE +KALA ++F    A+ RIDMSEYME H++ RLIGAPPGYVGY+E GQLTE VRRRPY +IL DEI+KA+ +VFN+ L  LD+GR+TD +G    F NTVII+TSN+GS+ +
Sbjct:  615 GKTETAKALAEFLFDDVNAMTRIDMSEYMEAHSVARLIGAPPGYVGYDEGGQLTEAVRRRPYSLILFDEIEKANPEVFNIFLQILDEGRLTDGKGRNVDFKNTVIILTSNIGSEIL 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPE_LACLM (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 72/113 (63.72%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL+K LA  +F + E+++R DMSEYMEKH++ +LIGAPPGYVGYEE GQLTE VRR PY +IL DEI+KAH DV ++ L  L+DGR+TD+QG T SF +++IIMTSN G+
Sbjct:  486 GKTELAKQLAKELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGT 598          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPE_LACLA (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. lactis GN=clpE PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 72/113 (63.72%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGS 339
            GKTEL+K LA  +F + E+++R DMSEYMEKH++ +LIGAPPGYVGYEE GQLTE VRR PY +IL DEI+KAH DV ++ L  L+DGR+TD+QG T SF +++IIMTSN G+
Sbjct:  486 GKTELAKQLAKELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGT 598          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PROMP (Chaperone protein clpB OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 70/119 (58.82%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTELSK +A  +F +  ++ R+DMSEYMEKH++ ++IGAPPGY+G+E  GQLTE VR+ PY +IL DEI+KAH DV +V+L  LDDG +TD QG T SF N++I++TSN+GSQ I D+
Sbjct:  613 GKTELSKVIAKTIFDSNSSITRLDMSEYMEKHSVSKIIGAPPGYLGFESGGQLTEAVRKNPYSLILLDEIEKAHKDVLDVLLQVLDDGIITDGQGRTISFKNSIIVLTSNLGSQSINDL 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 68/117 (58.12%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL 351
            GKT L+KALA ++F T++A++R DMSE+ EKH I RLIG+PPGY+GYEE G+LTE VRR+PY V+L DE++KAH D+ N++L  LD+G +TDSQG    F +T+I+MTSN+GS  ++
Sbjct:  544 GKTALTKALAEFLFDTDKAMIRFDMSEFQEKHTIARLIGSPPGYIGYEESGELTEAVRRKPYAVLLFDELEKAHHDITNLLLQVLDEGFLTDSQGRKVDFRSTLIVMTSNLGSDILV 660          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKT L+KALA +MF  E A++RIDMSEYMEKH++ RLIGAPPGYVG+E  GQLTE +RRRPY VIL DEI+KA  +V  V+L  LDDGR+T  QG      N VIIMTSN+G++Y+
Sbjct:  626 GKTLLTKALASFMFDDENAMIRIDMSEYMEKHSVSRLIGAPPGYVGHEAGGQLTEQLRRRPYSVILFDEIEKAAPEVLTVLLQVLDDGRITSGQGQVVDAKNAVIIMTSNLGAEYL 741          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_TROWT (Chaperone protein clpB OS=Tropheryma whipplei (strain Twist) GN=clpB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.315e-35
Identity = 73/122 (59.84%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKT+L KALA  ++  E  +VRIDMSEY EK +I RLIGAPPGY+G+E  GQLTE VRRRPY V+L DE +KAH +VF+++L  LD+GR+TDS G T  F NT+I++TSN+GS+Y+ D+  E
Sbjct:  460 GKTQLVKALASLLYDGE--IVRIDMSEYSEKFSISRLIGAPPGYIGHESAGQLTESVRRRPYSVVLFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTSNIGSRYLSDISLE 579          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_TROW8 (Chaperone protein clpB OS=Tropheryma whipplei (strain TW08/27) GN=clpB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.315e-35
Identity = 73/122 (59.84%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKT+L KALA  ++  E  +VRIDMSEY EK +I RLIGAPPGY+G+E  GQLTE VRRRPY V+L DE +KAH +VF+++L  LD+GR+TDS G T  F NT+I++TSN+GS+Y+ D+  E
Sbjct:  454 GKTQLVKALASLLYDGE--IVRIDMSEYSEKFSISRLIGAPPGYIGHESAGQLTESVRRRPYSVVLFDEAEKAHPEVFDILLQVLDEGRLTDSHGRTVDFRNTIIVLTSNIGSRYLSDISLE 573          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPE_BACSU1.346e-3664.60ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_LEPIN1.758e-3662.93Chaperone protein clpB OS=Leptospira interrogans G... [more]
CLPB_LEPIC1.758e-3662.93Chaperone protein clpB OS=Leptospira interrogans s... [more]
CLPE_LACLM1.488e-3563.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPE_LACLA1.488e-3563.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PROMP1.488e-3558.82Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
HSP78_SCHPO1.944e-3558.12Heat shock protein 78, mitochondrial OS=Schizosacc... [more]
HS104_SCHPO1.944e-3563.79Heat shock protein 104 OS=Schizosaccharomyces pomb... [more]
CLPB_TROWT3.315e-3559.84Chaperone protein clpB OS=Tropheryma whipplei (str... [more]
CLPB_TROW83.315e-3559.84Chaperone protein clpB OS=Tropheryma whipplei (str... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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