CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_STRP6 (Probable ATP-dependent Clp protease ATP-binding subunit OS=Streptococcus pyogenes serotype M6 GN=clpC PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.403e-27
Identity = 60/113 (53.10%), Postives = 82/113 (72.57%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F +++A++R+DMSEY ++ A+ +LIG   GYVGY++    LTE VRR PY ++L DEI+KA   +  ++L  LDDGR+TD QG T +F NTVII TSN G
Sbjct:  457 GKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTINFKNTVIIATSNAG 569          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPA_ECOLI (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli (strain K12) GN=clpA PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 60/116 (51.72%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 GKTE----LSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTE    LSKAL          L+R DMSEYME+H + RLIGAPPGYVG+++ G LT+ V + P+ V+L DEI+KAH DVFN++L  +D+G +TD+ G    F N V++MT+N G
Sbjct:  500 GKTEVTVQLSKALGI-------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPA_ECOL6 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O6 GN=clpA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 60/116 (51.72%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 GKTE----LSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTE    LSKAL          L+R DMSEYME+H + RLIGAPPGYVG+++ G LT+ V + P+ V+L DEI+KAH DVFN++L  +D+G +TD+ G    F N V++MT+N G
Sbjct:  500 GKTEVTVQLSKALGI-------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPA_ECO57 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O157:H7 GN=clpA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 60/116 (51.72%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 GKTE----LSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTE    LSKAL          L+R DMSEYME+H + RLIGAPPGYVG+++ G LT+ V + P+ V+L DEI+KAH DVFN++L  +D+G +TD+ G    F N V++MT+N G
Sbjct:  500 GKTEVTVQLSKALGI-------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_HUMAN (Caseinolytic peptidase B protein homolog OS=Homo sapiens GN=CLPB PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 GKTELSKALAFYMFY-TEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+K  A YM    ++  +R+DMSE+ E+H + + IG+PPGYVG+EE GQLT+ +++ P  V+L DE+DKAH DV  ++L   D+GR+TD +G T    + + IMTSNV S  I
Sbjct:  386 GKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYVGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEI 502          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RAT (Caseinolytic peptidase B protein homolog OS=Rattus norvegicus GN=Clpb PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 GKTELSKALAFYMFY-TEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+K  A YM    ++  +R+DMSE+ E+H + + IG+PPGY+G+EE GQLT+ +++ P  V+L DE+DKAH DV  ++L   D+GR+TD +G T    + + IMTSNV S  I
Sbjct:  356 GKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEI 472          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_MOUSE (Caseinolytic peptidase B protein homolog OS=Mus musculus GN=Clpb PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 GKTELSKALAFYMFY-TEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+K  A YM    ++  +R+DMSE+ E+H + + IG+PPGY+G+EE GQLT+ +++ P  V+L DE+DKAH DV  ++L   D+GR+TD +G T    + + IMTSNV S  I
Sbjct:  356 GKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEI 472          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BOVIN (Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 GKTELSKALAFYMFY-TEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+K  A YM    ++  +R+DMSE+ E+H + + IG+PPGY+G+EE GQLT+ +++ P  V+L DE+DKAH DV  ++L   D+GR+TD +G T    + + IMTSNV S  I
Sbjct:  356 GKTELAKQTAKYMHKDAKKGFIRLDMSEFQERHEVAKFIGSPPGYIGHEEGGQLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEI 472          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAAB (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  +EAL+R+DMSEY +  AI ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKEALIRLDMSEYSDTTAISKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAAR (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MRSA252) GN=clpL PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.185e-26
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  +EAL+R+DMSEY +  A+ ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKEALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPC_STRP67.403e-2753.10Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPA_ECOLI2.154e-2651.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECOL62.154e-2651.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECO572.154e-2651.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_HUMAN2.813e-2648.72Caseinolytic peptidase B protein homolog OS=Homo s... [more]
CLPB_RAT3.674e-2647.86Caseinolytic peptidase B protein homolog OS=Rattus... [more]
CLPB_MOUSE3.674e-2647.86Caseinolytic peptidase B protein homolog OS=Mus mu... [more]
CLPB_BOVIN3.674e-2647.86Caseinolytic peptidase B protein homolog OS=Bos ta... [more]
CLPL_STAAB6.267e-2653.10ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAR8.185e-2652.21ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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