CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAAW (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MW2) GN=clpL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.823e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  ++AL+R+DMSEY +  A+ ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAAS (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MSSA476) GN=clpL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.823e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  ++AL+R+DMSEY +  A+ ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAAN (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain N315) GN=clpL PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.823e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  ++AL+R+DMSEY +  A+ ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAAM (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpL PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.823e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  ++AL+R+DMSEY +  A+ ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAAC (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain COL) GN=clpL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.823e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  ++AL+R+DMSEY +  A+ ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain NCTC 8325) GN=clpL PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.823e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  ++AL+R+DMSEY +  A+ ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPL_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain USA300) GN=clpL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.823e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQ-LTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVG 336
            GKTEL+K LA  +F  ++AL+R+DMSEY +  A+ ++IG   GYVGY++    LTE VRR PY VIL DEI+KA+  +  ++L  +DDG +TD QG   +F NT+II TSN G
Sbjct:  462 GKTELAKQLAIDLFGNKDALIRLDMSEYSDTTAVSKMIGTTAGYVGYDDNSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG 574          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPV1_PSEAE (Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.381e-25
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTE + ALA  M+  E+ ++ I+MSE+ E H +  L GAPPGY+GY E G LTE VRR+PY V+L DE++KAH DV  +     D G + D +G    F NT+I++T+N G++ I  +
Sbjct:  645 GKTETALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTEMIASL 763          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: AMIB_PSEAE (ATP-dependent protease ATP-binding subunit-like protein amiB OS=Pseudomonas aeruginosa GN=amiB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 48/127 (37.80%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTE-----GVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQG-LTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTE+ +ALA  +    E   R+DM+   ++H    L GAPPGYVG +E   L E     G   RP +V+  DE++KA  +V + +L+ LD+G +  + G  T  F NT++ MTSN+ +  I   D+
Sbjct:  101 GKTEIVRALARALHGDAEGFCRVDMNTLSQEHYAAALTGAPPGYVGAKEGTTLLEQDKLDGSPGRPGIVLF-DELEKASPEVVHALLNVLDNGLLRVASGERTYHFRNTLVFMTSNLCAHEIQRYDE 226          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: ADPR_RHOER (ATP-dependent protease ATP-binding subunit-like protein OS=Rhodococcus erythropolis PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.694e-11
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTE--GVRRRPYL--VILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTE-SFTNTVIIMTSNVGSQYILD 354
            GKTEL + +A  +    + L RIDM+   ++H      GAPPGY G +E   L +   V   PY   ++L DE++KA   V   +L  LD+G +  + G  + SF N+ + +TSN+GS  + +
Sbjct:   84 GKTELVRRVAAELRSGPDDLCRIDMNALAQEHYAASFSGAPPGYAGSKESFTLFDKNTVEGDPYTPGIVLFDEVEKADPTVLRALLQVLDNGELRLANGQQKISFRNSYVFLTSNLGSAAVAE 206          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPL_STAAW1.823e-2551.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAS1.823e-2551.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAN1.823e-2551.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAM1.823e-2551.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAC1.823e-2551.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAA81.823e-2551.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAA31.823e-2551.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPV1_PSEAE2.381e-2546.22Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 P... [more]
AMIB_PSEAE3.567e-1337.80ATP-dependent protease ATP-binding subunit-like pr... [more]
ADPR_RHOER5.694e-1134.96ATP-dependent protease ATP-binding subunit-like pr... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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