CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 4.320e-43
Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K LA  +F TEEA++RIDM+EYMEKHA+ RLIGAPPGYVGYEE GQLTE VRRRPY VIL DEI+KAH DVFN++L  LDDGR+TDS G T  F NTVII+TSN+GS  IL+
Sbjct:  600 GKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILE 717          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.320e-43
Identity = 86/118 (72.88%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K LA  +F TEEA++RIDM+EYMEKHA+ RLIGAPPGYVGYEE GQLTE VRRRPY VIL DEI+KAH DVFN++L  LDDGR+TDS G T  F NTVII+TSN+GS  IL+
Sbjct:  600 GKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILE 717          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.320e-43
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL KALA ++F TE+A+VRIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE +RRRPY VIL DEI+KAH+DVFNV+L  LDDGR+TD QG T  F NTVI+MTSN+GS  I +   E
Sbjct:  612 GKTELCKALAVFLFDTEDAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAIRRRPYSVILLDEIEKAHNDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSDLIREFSGE 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.642e-43
Identity = 82/122 (67.21%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL+KALA+ MF +E+ ++RIDMSEYMEKH++ RL+GAPPGYVGYEE GQLTE VRR PY ++L DEI+KAH DVFN++L  LDDGR+TDSQG    F NTVIIMTSN+GS  +L+  +E
Sbjct:  616 GKTELAKALAYNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEE 737          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.368e-43
Identity = 83/119 (69.75%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL++ALA  +F  E ALVRIDMSEYMEKHA+ R+IGAPPGYVG++  GQLTE +RRRPY V+L DE++KAH +VFNV+L  LDDGR+TDSQG T  F NTVIIMTSN+GS++ILD+
Sbjct:  624 GKTELARALAEALFDDENALVRIDMSEYMEKHAVSRMIGAPPGYVGFDSGGQLTEAIRRRPYAVVLFDEVEKAHPEVFNVLLQVLDDGRITDSQGRTVDFRNTVIIMTSNLGSEHILDL 742          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 9.623e-43
Identity = 86/122 (70.49%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL KALA  MF  E A+VRIDMSE+ME+H++ RLIGAPPGYVGYEE G+LTE VRRRPY VIL DE++KAH DVFNV+L  LDDGR+TD QG T +FTNTV++MTSNVGSQ I  + +E
Sbjct:  633 GKTELCKALAEVMFDDESAMVRIDMSEFMERHSVSRLIGAPPGYVGYEEGGKLTEAVRRRPYAVILLDEMEKAHPDVFNVLLQVLDDGRLTDGQGRTVNFTNTVVVMTSNVGSQVIQRVTEE 754          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.623e-43
Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL KALA ++F +E+ L+RIDMSEYMEKHA+ RLIGAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTVI+MTSN+GSQ+I  M
Sbjct:  614 GKTELCKALAGFLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQM 732          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.623e-43
Identity = 84/119 (70.59%), Postives = 99/119 (83.19%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL KALA ++F +E+ L+RIDMSEYMEKHA+ RLIGAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTVI+MTSN+GSQ+I  M
Sbjct:  614 GKTELCKALAGFLFDSEDHLIRIDMSEYMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHIQQM 732          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 9.623e-43
Identity = 83/121 (68.60%), Postives = 100/121 (82.64%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL+K+LA ++F  E A+VR+DMSEYMEKH++ RLIGAPPGYVGYEE G LTE VRRRPY V+L DEI+KAH DVFNV+L  LDDGR+TD QG T  F NT+IIMTSN+GS+++  M D
Sbjct:  612 GKTELTKSLARFLFDDETAMVRLDMSEYMEKHSVARLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTSNLGSEFMTQMGD 732          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.257e-42
Identity = 83/118 (70.34%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL K LA  +F TEE +VR+DMSEYMEKHA+ RLIGAPPGYVGY+E GQLTE VRR+PY V+L DE++KAH DVFN +L  LDDGR+TDS G T  F NT+IIMTSN+GS Y+LD
Sbjct:  615 GKTELCKTLAEALFDTEENIVRLDMSEYMEKHAVARLIGAPPGYVGYDEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNTLLQILDDGRLTDSHGRTVDFRNTIIIMTSNIGSPYMLD 732          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_THET84.320e-4372.88Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET24.320e-4372.88Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_COXBU4.320e-4369.67Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]
CLPB_LISIN5.642e-4367.21Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]
CLPB2_THEEB7.368e-4369.75Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB_RHOBA9.623e-4370.49Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLPB_NEIMB9.623e-4370.59Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_NEIMA9.623e-4370.59Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_AGRT59.623e-4368.60Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLPB_DESVH1.257e-4270.34Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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