CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.257e-42
Identity = 83/121 (68.60%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL+KALA ++F  + A+VRIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRRRPY VIL DEI+KAH DVFNV+L  LDDGR+TD QG T  F NTVIIMTSN+G++Y++++ +
Sbjct:  610 GKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEYLVNLGE 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.257e-42
Identity = 81/122 (66.39%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL++ALA  +F  E+AL+R DMSEYMEK++I RLIGAPPGY+GYEE GQL+E +RR PY V+L DE++KAH DVFN++L  LDDGR+TDSQG T  F N VI+MTSN+GSQ+IL+M +E
Sbjct:  622 GKTELARALANCLFDAEDALIRFDMSEYMEKNSISRLIGAPPGYIGYEEGGQLSEAIRRHPYAVVLFDEVEKAHPDVFNLLLQVLDDGRITDSQGRTIDFCNAVIVMTSNIGSQFILEMGEE 743          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.642e-42
Identity = 83/121 (68.60%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL+KALA Y+F  E A+VRIDMSE+MEKH++ RLIGAPPGYVGY+E G LTE VRRRPY VIL DEI+KAH DVFNV+L  LDDGR+TD QG T  F NT+I+MTSN+GS+Y+++  +
Sbjct:  611 GKTELTKALAEYLFDDETAMVRIDMSEFMEKHSVARLIGAPPGYVGYDEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSNLGSEYLVNQPE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.642e-42
Identity = 81/122 (66.39%), Postives = 103/122 (84.43%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL+KALA ++F  + A+VRIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRRRPY V+L DEI+KAH DVFNV+L  LDDGR+TD QG T  F NT+IIMTSN+G++Y++++ ++
Sbjct:  610 GKTELTKALASFLFDDDSAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLVNLGED 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.642e-42
Identity = 83/121 (68.60%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL+KALA ++F  + A+VRIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRRRPY VIL DEI+KAH DVFNV+L  LDDGR+TD QG T  F NTVIIMTSN+G++Y++++ +
Sbjct:  610 GKTELTKALASFLFQDDTAMVRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGVLTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNLGAEYLVNLGE 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.144e-42
Identity = 82/121 (67.77%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL+KALA Y+F  E A+VR+DMSEYMEKH++ RLIGAPPGYVGY+E G LTE VRRRPY V+L DEI+KAH DVFNV+L  LDDGR+TD QG T  F NT+IIMTSN+GS+++++  +
Sbjct:  611 GKTELTKALAEYLFNDETAMVRLDMSEYMEKHSVSRLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGSEFLVNQPE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.657e-42
Identity = 83/116 (71.55%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+KALA ++F  E AL+RIDMSEYMEKH++ RLIGAPPGYVGYEE G LTE VRRRPY V+L DEI+KAH DVFNV+L  LDDGR+TD QG T  F NT+IIMTSN+G++Y+
Sbjct:  612 GKTELTKALARFLFDDETALMRIDMSEYMEKHSVARLIGAPPGYVGYEEGGALTESVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTMIIMTSNLGAEYL 727          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.657e-42
Identity = 83/119 (69.75%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL KALA ++F TEEA+VRIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRR+PY VIL DE++KAHSDVFN++L  L+DGR+TDS G T  F NTVI+MTSN+GS  I ++
Sbjct:  610 GKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHSDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQIQEL 728          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_TREPA (Chaperone protein clpB OS=Treponema pallidum GN=clpB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.776e-42
Identity = 82/117 (70.09%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL 351
            GKTEL++ LA ++F  E AL RIDMSEYMEKHAI RLIGAPPGYVGY+E GQLTE VRRRPY V+L DE++KAH DVFN+ L  LDDGR+TD QG    F NT+IIMTSN+GS++IL
Sbjct:  614 GKTELARTLADFLFNDERALTRIDMSEYMEKHAISRLIGAPPGYVGYDEGGQLTEAVRRRPYSVLLFDEVEKAHQDVFNIFLQILDDGRLTDGQGRVVDFRNTIIIMTSNIGSEHIL 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.776e-42
Identity = 78/118 (66.10%), Postives = 100/118 (84.75%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+KALA ++F  E A+VRIDMSEY EKH++ RL+GAPPGYVGYEE GQLTE VRRRPY V+L DE++KAH +VF+++L  LDDGR+TD QG T  F NT++++TSN+GSQY++D
Sbjct:  614 GKTELAKALADFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYTVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSQYLVD 731          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_BRUSU1.257e-4268.60Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB2_SYNE71.257e-4266.39Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_RHOPA1.642e-4268.60Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_RHILO1.642e-4266.39Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB_BRUME1.642e-4268.60Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_BRAJA2.144e-4267.77Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB_RHIME3.657e-4271.55Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_PSESM3.657e-4269.75Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]
CLPB_TREPA4.776e-4270.09Chaperone protein clpB OS=Treponema pallidum GN=cl... [more]
CLPB_STRCO4.776e-4266.10Chaperone protein clpB OS=Streptomyces coelicolor ... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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