CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.776e-42
Identity = 83/122 (68.03%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL KALA ++F +EE L+RIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRR+PY V+L DE++KAH DVFN++L  LDDGR+TD QG T  F NTVI+MTSN+GSQ I  M  E
Sbjct:  613 GKTELCKALAGFLFDSEEHLIRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNLGSQLIQQMASE 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.776e-42
Identity = 82/119 (68.91%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL++ALA ++F +EE ++RIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFNV+L  LDDGR+TD QG T  F NTVI+MTSN+GSQ+I  M
Sbjct:  616 GKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQSM 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BORPA (Chaperone protein clpB OS=Bordetella parapertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.776e-42
Identity = 82/119 (68.91%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL++ALA ++F +EE ++RIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFNV+L  LDDGR+TD QG T  F NTVI+MTSN+GSQ+I  M
Sbjct:  616 GKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQSM 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BORBR (Chaperone protein clpB OS=Bordetella bronchiseptica GN=clpB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.776e-42
Identity = 82/119 (68.91%), Postives = 100/119 (84.03%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL++ALA ++F +EE ++RIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFNV+L  LDDGR+TD QG T  F NTVI+MTSN+GSQ+I  M
Sbjct:  616 GKTELTRALADFLFDSEEHMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSQHIQSM 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.238e-42
Identity = 82/116 (70.69%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL KALA ++F +++A+VRIDMSE+MEKHA+ RL+GAPPGYVGYEE G LTE VRRRPY VIL DE++KAHSDVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  610 GKTELCKALANFLFDSDDAMVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDMI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.238e-42
Identity = 85/118 (72.03%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K LA  +F TEE +VRIDMSEY EKH + RLIGAPPGYVGYEE GQLTE VRRRPY VIL DEI+KAH DVFNV+L  LDDGR+TD QG T  F NTVII+TSN+GS  I +
Sbjct:  600 GKTELAKTLAASLFDTEENMVRIDMSEYQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIILTSNIGSPLIFE 717          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.238e-42
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTE +KALA ++F  ++A+VRIDMSEY EKH + RLIGAPPGYVGYEE GQLTE VRRRPY ++L DEI+KAH +VFNV+L  LDDGR+TD QG T  F NTVIIMTSN+GSQ+I
Sbjct:  616 GKTETAKALAEFLFNDDQAIVRIDMSEYQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYSIVLFDEIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQWI 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.147e-42
Identity = 83/122 (68.03%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL KALA ++F +EE L+R+DMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFNV+L  LDDGR+TD QG T  F NTVI+MTSN+GSQ I  M  +
Sbjct:  615 GKTELCKALAGFLFDSEEHLIRVDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSQMIQQMSGD 736          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.064e-41
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL KALA +MF ++EA+VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRRRPY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  610 GKTELCKALANFMFDSDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.064e-41
Identity = 82/122 (67.21%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL K LA ++F +E+A+VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRRRPY VIL DE++KAH+DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I    DE
Sbjct:  610 GKTELCKTLAKFLFDSEDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQGNKDE 731          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_RALSO4.776e-4268.03Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_BORPE4.776e-4268.91Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_BORPA4.776e-4268.91Chaperone protein clpB OS=Bordetella parapertussis... [more]
CLPB_BORBR4.776e-4268.91Chaperone protein clpB OS=Bordetella bronchiseptic... [more]
CLPB_PHOLL6.238e-4270.69Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB_MEIRU6.238e-4272.03Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_GEOSL6.238e-4270.69Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_NITEU8.147e-4268.03Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_SHIFL1.064e-4170.69Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_HAEIN1.064e-4167.21Chaperone protein clpB OS=Haemophilus influenzae G... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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