CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.370e-41
Identity = 81/116 (69.83%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL KALA +MF +++A+VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRRRPY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  610 GKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.096e-41
Identity = 80/122 (65.57%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL KALA ++F + EA++RIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRRRPY +IL DE++KAH+DVFN++L  LDDGR+TD QG T  F NTVI+MTSN+GS  I ++  +
Sbjct:  610 GKTELCKALADFLFDSTEAMIRIDMSEFMEKHSVSRLIGAPPGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGD 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.096e-41
Identity = 80/117 (68.38%), Postives = 97/117 (82.91%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL 351
            GKTEL+KALA ++F  E A+VRIDMSEYMEKH++ RL+GAPPGYVGYEE GQLTE VRRRPY V+L DEI+K H DVFN +L  LDDGR+TD QG T  F N ++IMTSN+GSQ+++
Sbjct:  613 GKTELAKALADFLFDDETAMVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKVHPDVFNFLLQVLDDGRLTDGQGRTVDFRNVILIMTSNLGSQFMV 729          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.096e-41
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K LA  +F +E+ +VRIDMSEYMEKHA+ RLIG PPGYVGYEE GQLTE VRR PY VIL DEI+KAH DVFN+ L  LDDGR+TD++G T  F NT+IIMTSN+GS Y+L+
Sbjct:  617 GKTELAKTLARNLFDSEDNIVRIDMSEYMEKHAVSRLIGPPPGYVGYEEGGQLTEAVRRNPYSVILFDEIEKAHDDVFNLFLQILDDGRLTDNKGKTVDFKNTIIIMTSNIGSGYLLE 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB1_CHLTE (Probable chaperone protein clpB 1 OS=Chlorobium tepidum GN=clpB1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.096e-41
Identity = 79/116 (68.10%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL++ LA Y+F  E+AL+RIDMSEYME H + RL+GAPPGYVGYEE GQLTE VRR+P+ V+L DEI+KAH DVFN++L  LDDGR+TDS+G T +F NT+IIMTSN+G+Q I
Sbjct:  183 GKTELARTLAEYLFDDEDALIRIDMSEYMEAHTVSRLVGAPPGYVGYEEGGQLTEAVRRKPFSVVLLDEIEKAHPDVFNILLQILDDGRLTDSKGRTVNFKNTIIIMTSNIGAQLI 298          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.043e-41
Identity = 80/116 (68.97%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL KALA ++F +++A+VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRRRPY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  610 GKTELCKALATFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.043e-41
Identity = 80/122 (65.57%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL KALA ++F + EA++RIDMSE+MEKH++ RLIGAPPGYVGYEE G LTE VRRRPY +IL DE++KAH DVFN++L  LDDGR+TD QG T  F NTVI+MTSN+GS  I ++  +
Sbjct:  610 GKTELCKALADFLFDSTEAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGD 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.043e-41
Identity = 82/116 (70.69%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL K+LA ++F +E ALVRIDMSE+MEKHA+ RL+GAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTVIIMTSN+GS  I
Sbjct:  610 GKTELCKSLARFLFDSESALVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDII 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.043e-41
Identity = 82/119 (68.91%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL K LA ++F +++ L+RIDMSEYMEKH++ RLIGAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFNV+L  LDDGR+TD QG T  F NTVI+MTSN+GSQ I  M
Sbjct:  614 GKTELCKTLASFLFDSKDHLIRIDMSEYMEKHSVARLIGAPPGYVGYEEGGYLTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQQIQAM 732          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL K LA +MF +E+A+VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  610 GKTELCKTLASFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRI 725          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_SALTI2.370e-4169.83Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_XANCP3.096e-4165.57Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB_PROFR3.096e-4168.38Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPB_CLOPE3.096e-4169.49Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB1_CHLTE3.096e-4168.10Probable chaperone protein clpB 1 OS=Chlorobium te... [more]
CLPB_YERPE4.043e-4168.97Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_XANAC4.043e-4165.57Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_SHEON4.043e-4170.69Chaperone protein clpB OS=Shewanella oneidensis GN... [more]
CLPB_CHRVO4.043e-4168.91Chaperone protein clpB OS=Chromobacterium violaceu... [more]
CLPB_VIBPA5.281e-4168.97Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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