CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STAES (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 80/118 (67.80%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F +E+ ++RIDMSEYMEKHA+ RLIGAPPGYVG++E GQLTE VRR PY VIL DE++KAHSDVFNV+L  LD+GR+TDS+G +  F NT+IIMTSN+GSQ +L+
Sbjct:  614 GKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYVGHDEGGQLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STAEQ (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 80/118 (67.80%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F +E+ ++RIDMSEYMEKHA+ RLIGAPPGYVG++E GQLTE VRR PY VIL DE++KAHSDVFNV+L  LD+GR+TDS+G +  F NT+IIMTSN+GSQ +L+
Sbjct:  614 GKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYVGHDEGGQLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 79/119 (66.39%), Postives = 99/119 (83.19%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL KALA ++F TEEALVRIDMSE+MEKH++ RLIGAPPGYVG+EE G LTE +RR+PY V+L DE++KAH DVFN++L  L+DGR+TDS G T  F NTV++MTSN+GS  I ++
Sbjct:  610 GKTELCKALAEFLFDTEEALVRIDMSEFMEKHSVARLIGAPPGYVGFEEGGYLTEAIRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVVVMTSNLGSAQIQEL 728          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.897e-41
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL K LA +MF +E+A+VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  610 GKTELCKTLANFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.897e-41
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL K LA +MF +E+A+VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  610 GKTELCKTLANFMFDSEDAMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNPX (Chaperone protein clpB 2 OS=Synechococcus sp. (strain WH8102) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.007e-41
Identity = 82/118 (69.49%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+KALA  +F  EEALVR+DMSE+ME++A  RLIGAPPGYVGYEE GQLTE VRRRPY V+L DE++KAH DVFN++L  LDDGR+TDSQGLT  F +TV++MTSN+ S  IL+
Sbjct:  646 GKTELAKALATSLFDEEEALVRLDMSEFMERNASARLIGAPPGYVGYEEGGQLTEAVRRRPYAVLLLDEVEKAHPDVFNLLLQVLDDGRLTDSQGLTVDFRHTVVVMTSNLASPVILE 763          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RICFE (Chaperone protein clpB OS=Rickettsia felis GN=clpB PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.176e-40
Identity = 75/122 (61.48%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL+KALA ++F    A++RIDMSEYMEKHAI RLIGAPPGY+GY++ G LTE VRRRPY VIL DE++KAH D+FN++L  LD+GR+TDSQG+T  F NT+I++TSN+G++ +++  ++
Sbjct:  609 GKTELTKALASFLFDDRNAILRIDMSEYMEKHAISRLIGAPPGYIGYDQGGVLTEAVRRRPYQVILFDEVEKAHPDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVNQKED 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.176e-40
Identity = 81/116 (69.83%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL K LA +MF +E+ +VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRRRPY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTVIIMTSN+GS  I
Sbjct:  610 GKTELCKTLANFMFDSEDNMVRIDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDRI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.176e-40
Identity = 80/122 (65.57%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL+K L   +F +EE ++RIDMSEYMEK+++ RLIGAPPGYVGYEE GQLTE VRR+PY VIL DEI+KAH DVFN+ L  LDDGR+TD++G T  F N +IIMTSN+GS Y+L+   E
Sbjct:  616 GKTELAKTLCKNLFDSEENIIRIDMSEYMEKYSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILFDEIEKAHDDVFNIFLQILDDGRLTDNKGKTVDFKNCIIIMTSNIGSSYLLENKKE 737          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 76/117 (64.96%), Postives = 98/117 (83.76%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL 351
            GKTEL+KALA ++F  E A++RIDMSEY EKH++ RL+GAPPGYVGYEE GQLTE VRRRPY V+L DE++KAH  VF+++L  LDDGR+TD QG T  F NT++++TSN+GSQY++
Sbjct:  610 GKTELAKALADFLFDDERAMIRIDMSEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPGVFDILLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSQYLV 726          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_STAES5.281e-4167.80Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_STAEQ5.281e-4167.80Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_PSEAE5.281e-4166.39Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_VIBVY6.897e-4168.97Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_VIBVU6.897e-4168.97Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB2_SYNPX9.007e-4169.49Chaperone protein clpB 2 OS=Synechococcus sp. (str... [more]
CLPB_RICFE1.176e-4061.48Chaperone protein clpB OS=Rickettsia felis GN=clpB... [more]
CLPB_PHOPR1.176e-4069.83Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_CLOTE1.176e-4065.57Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB_STRAL1.536e-4064.96Chaperone protein clpB OS=Streptomyces albus G GN=... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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