CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STAAW (Chaperone protein clpB OS=Staphylococcus aureus (strain MW2) GN=clpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 78/118 (66.10%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F +E+ ++RIDMSEYMEKHA+ RLIGAPPGY+G++E GQLTE VRR PY VIL DE++KAH+DVFNV+L  LD+GR+TDS+G +  F NT+IIMTSN+GSQ +L+
Sbjct:  614 GKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STAAS (Chaperone protein clpB OS=Staphylococcus aureus (strain MSSA476) GN=clpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 78/118 (66.10%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F +E+ ++RIDMSEYMEKHA+ RLIGAPPGY+G++E GQLTE VRR PY VIL DE++KAH+DVFNV+L  LD+GR+TDS+G +  F NT+IIMTSN+GSQ +L+
Sbjct:  614 GKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STAAR (Chaperone protein clpB OS=Staphylococcus aureus (strain MRSA252) GN=clpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 78/118 (66.10%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F +E+ ++RIDMSEYMEKHA+ RLIGAPPGY+G++E GQLTE VRR PY VIL DE++KAH+DVFNV+L  LD+GR+TDS+G +  F NT+IIMTSN+GSQ +L+
Sbjct:  614 GKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STAAN (Chaperone protein clpB OS=Staphylococcus aureus (strain N315) GN=clpB PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 78/118 (66.10%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F +E+ ++RIDMSEYMEKHA+ RLIGAPPGY+G++E GQLTE VRR PY VIL DE++KAH+DVFNV+L  LD+GR+TDS+G +  F NT+IIMTSN+GSQ +L+
Sbjct:  614 GKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STAAM (Chaperone protein clpB OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpB PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 78/118 (66.10%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F +E+ ++RIDMSEYMEKHA+ RLIGAPPGY+G++E GQLTE VRR PY VIL DE++KAH+DVFNV+L  LD+GR+TDS+G +  F NT+IIMTSN+GSQ +L+
Sbjct:  614 GKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_STAAC (Chaperone protein clpB OS=Staphylococcus aureus (strain COL) GN=clpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 78/118 (66.10%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K+LA  +F +E+ ++RIDMSEYMEKHA+ RLIGAPPGY+G++E GQLTE VRR PY VIL DE++KAH+DVFNV+L  LD+GR+TDS+G +  F NT+IIMTSN+GSQ +L+
Sbjct:  614 GKTELAKSLAASLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYIGHDEGGQLTEAVRRNPYSVILLDEVEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQVLLE 731          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.536e-40
Identity = 75/122 (61.48%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL+KALA ++F    A++RIDMSEYMEKHAI RLIGAPPGY+GY++ G LTE VRRRPY VIL DE++KAH D+FN++L  LD+GR+TDSQG+T  F NT+I++TSN+G++ +++  ++
Sbjct:  609 GKTELTKALAGFLFDDRNAILRIDMSEYMEKHAISRLIGAPPGYIGYDQGGVLTEAVRRRPYQVILFDEVEKAHPDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVNQKED 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.007e-40
Identity = 78/116 (67.24%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL K LA ++F +E+A+VR+DMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRR+PY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  610 GKTELCKTLANFLFDSEDAMVRVDMSEFMEKHSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.007e-40
Identity = 76/121 (62.81%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL+KALA ++F    A++RIDMSEYMEKHAI RLIGAPPGYVGY++ G LTE VRRRPY VIL DE++KAH D+FN++L  LD+GR+TDSQG+T  F NT+I++TSN+G++ +++  +
Sbjct:  609 GKTELTKALAGFLFDDRNAILRIDMSEYMEKHAISRLIGAPPGYVGYDQGGVLTEAVRRRPYQVILFDEVEKAHPDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVNQKE 729          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.007e-40
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL K LA ++F  E A+VRIDMSE+MEKH++ RL+GAPPGYVGYEE G LTE VRRRPY VIL DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+GS  I
Sbjct:  609 GKTELCKTLANFLFDDENAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLI 724          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_STAAW1.536e-4066.10Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAS1.536e-4066.10Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAR1.536e-4066.10Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAN1.536e-4066.10Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAM1.536e-4066.10Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_STAAC1.536e-4066.10Chaperone protein clpB OS=Staphylococcus aureus (s... [more]
CLPB_RICCN1.536e-4061.48Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_VIBCH2.007e-4067.24Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_RICBR2.007e-4062.81Chaperone protein clpB OS=Rickettsia bellii (strai... [more]
CLPB_PASMU2.007e-4068.97Chaperone protein clpB OS=Pasteurella multocida GN... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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