CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.007e-40
Identity = 77/116 (66.38%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+KALA ++F  E A+VRIDMSEY EKH + RL+GAPPGYVGYEE GQLTE VRRRPY V+L DE++KAH +VF+++L  LDDGR+TD QG T  F NT++I+TSN+GSQ++
Sbjct:  614 GKTELAKALADFLFDDERAMVRIDMSEYGEKHTVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGSQFL 729          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.621e-40
Identity = 78/116 (67.24%), Postives = 97/116 (83.62%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+KALA Y F +EEA+VR+DMSEYME+H + +LIG+PPGYVGY E GQLTE VRRRPY V+L DEI+K H DVFN++L  L+DGR+TDS+G T  F NT++I+TSNVGS+ I
Sbjct:  551 GKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLILTSNVGSKVI 666          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.621e-40
Identity = 77/116 (66.38%), Postives = 98/116 (84.48%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+KA+A Y F +EEA+VR+DMSEYME+H + +LIG+PPGYVGY E GQLTE VR+RPY V+L DEI+KAH DVFN++L  L+DGR+TDS+G T  F NT++IMTSN+GS+ I
Sbjct:  584 GKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTLLIMTSNIGSKVI 699          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_CLOAB (Chaperone protein clpB OS=Clostridium acetobutylicum GN=clpB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.621e-40
Identity = 78/118 (66.10%), Postives = 100/118 (84.75%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+K LA  MF +E+ ++RIDMSEYMEK+++ RLIG+PPGYVGYEE GQLTE VRR+PY VIL DEI+KAHSDVFN+ L   DDGR+TD++G T  F N++IIMTSN+GS+++L+
Sbjct:  616 GKTELAKTLARVMFDSEDNIIRIDMSEYMEKYSVSRLIGSPPGYVGYEEGGQLTEAVRRKPYSVILFDEIEKAHSDVFNIFLQIFDDGRLTDNKGNTIDFKNSIIIMTSNIGSEHLLN 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.423e-40
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTELSK LA ++F  E A+VRIDMSE+MEKH++ RL+GAPPGYVGYE+ G LTE VRRRPY V+L DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSN+G+  I
Sbjct:  610 GKTELSKTLANFLFDDENAIVRIDMSEFMEKHSVSRLVGAPPGYVGYEQGGYLTEAVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGAHLI 725          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RICPR (Chaperone protein clpB OS=Rickettsia prowazekii GN=clpB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.470e-40
Identity = 75/121 (61.98%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDD 363
            GKTEL+KALA ++F    AL+RIDMSEYMEKH+I RLIGAPPGY+GY++ G LTE VRRRPY VIL DE++KAH D+FN++L  LD+GR+TDSQG+T  F NT+I++TSN+G++ +++  +
Sbjct:  609 GKTELTKALAGFLFDDRNALLRIDMSEYMEKHSISRLIGAPPGYIGYDQGGVLTESVRRRPYQVILFDEVEKAHLDIFNIMLQILDEGRLTDSQGITVDFKNTIIVLTSNLGAEILVNQKE 729          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.470e-40
Identity = 76/116 (65.52%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYI 348
            GKTEL+KALA ++F  E  + RIDMSEY EKH++ RL+GAPPGYVGY+E GQLTE +RR+PY V+L DEI+KAH DVFN++L  LDDGR+TD++G   +F NT+IIMTSN+GS YI
Sbjct:  608 GKTELAKALAEFLFDDESMMTRIDMSEYQEKHSVSRLVGAPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNMGSSYI 723          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.838e-40
Identity = 76/122 (62.30%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKT+ +K LA ++F +++ LVRIDMSEYMEKHA  RL+GAPPGYVGYEE GQLTE +RR+PY V+L DEI+KAH DVFN++L  LDDGR+TD++G+T  F NT+II+TSN+ S  I++  D+
Sbjct:  613 GKTQSAKTLAKFLFDSDKNLVRIDMSEYMEKHAASRLVGAPPGYVGYEEGGQLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGVTVDFRNTIIILTSNIASDKIMENSDK 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_RICTY (Chaperone protein clpB OS=Rickettsia typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.625e-40
Identity = 74/122 (60.66%), Postives = 102/122 (83.61%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL+KALA ++F    AL+RIDMSEYMEKH+I RLIGAPPGY+GY++ G LTE VRRRPY VIL DE++KAH D+FN++L  LD+GR+T+SQG+T  F NT+I++TSN+G++ +++  ++
Sbjct:  609 GKTELTKALAGFLFDDRNALLRIDMSEYMEKHSISRLIGAPPGYIGYDQGGVLTESVRRRPYQVILFDEVEKAHLDIFNIMLQILDEGRLTNSQGITVDFKNTIIVLTSNLGAEILVNQQED 730          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.959e-40
Identity = 81/117 (69.23%), Postives = 96/117 (82.05%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYIL 351
            GKTEL+KALA  +F  E  LVRIDMSEYME+H++ RLIGAPPGYVG+EE GQLTE VRRRPY VIL DE++KAH  VFN +L  LDDGR+TD QG T  F NTVIIMTSN+G++++L
Sbjct:  612 GKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVARLIGAPPGYVGHEEGGQLTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 728          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB1_STRAW2.007e-4066.38Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
CLPC_GUITH2.621e-4067.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA2.621e-4066.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_CLOAB2.621e-4066.10Chaperone protein clpB OS=Clostridium acetobutylic... [more]
CLPB_HAEDU3.423e-4067.24Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPB_RICPR4.470e-4061.98Chaperone protein clpB OS=Rickettsia prowazekii GN... [more]
CLPB_BACTN4.470e-4065.52Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB_WOLSU5.838e-4062.30Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_RICTY7.625e-4060.66Chaperone protein clpB OS=Rickettsia typhi GN=clpB... [more]
HS101_ORYSJ9.959e-4069.23Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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