CX300180

Overview
NameCX300180
Unique NameCX300180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10228 contig Ccv1_Contig10228:432..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.008e-39
Identity = 81/137 (59.12%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK ES  K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQLPGGERV FLFTIKQ    G  +   G+FLVPSYRGSSFLDP
Sbjct:   69 GIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPSYRGSSFLDP 205          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 77/137 (56.20%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 GTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPENFGGEFLVPSYRGSSFLDP 408
            G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQL GGERVPFLFTIK L+A G    F G+F VPSYRG++FLDP
Sbjct:  113 GIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKGDAGQFLGQFDVPSYRGATFLDP 249          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 7.736e-32
Identity = 73/148 (49.32%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    1 GTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDP 408
            G AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQLPGGERVPFLFTIK LVA  +P         +F G F VPSYRG++FLDP
Sbjct:   42 GLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNLVAQTQPGLSSLNTSTDFEGTFKVPSYRGAAFLDP 187          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.940e-31
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    1 GTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDP 408
            G AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+ GGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDP
Sbjct:   40 GLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDP 185          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.940e-31
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 1
Query:    1 GTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDP 408
            G AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+ GGER+P LFT+K LVAS +P         +F GEF VPSYR ++FLDP
Sbjct:   40 GLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDP 185          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.042e-28
Identity = 68/146 (46.58%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    1 GTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPE--------NFGGEFLVPSYRGSSFLDP 408
            G AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQLPGGE+VPF FTIK LV   +P         +F G+F VPSYRG++FLDP
Sbjct:   43 GLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKNLVGKTEPGFSSINSSIDFEGDFRVPSYRGATFLDP 188          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.363e-27
Identity = 64/146 (43.84%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKP--------ENFGGEFLVPSYRGSSFLDP 408
            G AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV LPGGE VPF FT+K    + +P         +F G+F VPSYRG+ FLDP
Sbjct:   43 GLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNFTGTTEPGFTSINSSTDFVGDFNVPSYRGAGFLDP 188          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.112e-25
Identity = 64/146 (43.84%), Postives = 84/146 (57.53%), Query Frame = 1
Query:    1 GTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIKQLVAS--------GKPENFGGEFLVPSYRGSSFLDP 408
            G AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV LPGGE VPFLFT+K LVAS            +  G + VPSYR S+FLDP
Sbjct:   42 GLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLFTVKGLVASTSEPATSINTSTDLRGGYRVPSYRTSNFLDP 187          
BLAST of CX300180 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.265e-14
Identity = 42/71 (59.15%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  112 KAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFTIK 324
            KAE +NKN+PPDFQ TKLMTR                         DGIDYAAVTVQLPGGERVPFLFTIK
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLFTIK 55          
The following BLAST results are available for this feature:
BLAST of CX300180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE1.008e-3959.12Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR2.324e-3656.20Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_ANASP7.736e-3249.32Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_THEEB2.940e-3147.95Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN2.940e-3147.95Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA53.042e-2846.58Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY33.363e-2743.84Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE74.112e-2543.84Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU3.265e-1459.15Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07007B08SK SaltLeaf1 Citrus clementina cDNA clone C07007B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300180 ID=CX300180; Name=CX300180; organism=Citrus clementina; type=EST; length=410bp
GGAACTGCTAACCAGTGCCCAACCATTGATGGCGGAGTTGACTCTTTTGC
CTTCAAACCTGGCAAATACCAGGCTAAGAAGTTCTGCCTAGAACCAACTT
CCTTCACTGTCAAGGCTGAGAGTGTCAACAAGAATGCCCCACCAGATTTC
CAGAACACCAAGCTCATGACCCGCCTTACCTACACCCTTGACGAGATTGA
GGGACCTTTTGAAGTGTCCCCCGATGGCACCATTAAGTTTGTGGAGAAGG
ATGGAATTGACTATGCTGCTGTGACAGTTCAGCTGCCTGGAGGCGAGCGT
GTGCCCTTCCTTTTCACCATCAAACAATTGGTAGCATCAGGCAAGCCTGA
GAATTTCGGAGGAGAGTTCCTTGTACCATCATACCGTGGATCATCCTTCT
TGGACCCAAA
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