CX300181

Overview
NameCX300181
Unique NameCX300181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.487e-14
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  129 QKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQ 383
            +K    K  VVVD  A+WCGPC+ IAP + + A+   +  F ++DVDEL  VA +  + AMPTF+  K+G+ V  VVGA    L+
Sbjct:   18 EKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALE 102          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.248e-14
Identity = 33/89 (37.08%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  123 QLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVG-AKKEELQQ 386
            +L +   T + VVVDF A+WCGPC+ + P   E+A+   +  F+KVDVD+   +++++ + ++PT +F ++GK+ DK +G   K EL++
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELKE 97          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.248e-14
Identity = 32/90 (35.56%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  120 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP--NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQ 383
            ++  K   + +++++DF A+WCGPCR I+P   + ++K    N++F KVDVD    ++ +  + AMPTF   K+G+ +D++VGA    L+
Sbjct:    9 DEFNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALE 98          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.248e-14
Identity = 34/90 (37.78%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  117 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQ 386
            N  L++S +  +L+++DF A+WCGPCR I+P   + + +  N  FLKV+ D  + +   + + AMPTF+FLK  + VD V GA ++ + +
Sbjct:   13 NNILERS-DANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAE 101          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.242e-14
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  153 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            LV++DF A WCGPC+ + P L  LA +LP+V  LKVD+D     A  ++V ++PT +  K+GK V++ VG K ++
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKD 92          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.540e-14
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 380
            VV+D    WCGPC+ +AP   ELA+KL +V+FLK+D + E K +A +  +  +PTF  LK GKIVD+V GAK ++L
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKL 181          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.540e-14
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  117 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK--LPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 347
            N++LQK   +   VVVDF A WC PC+ IAP   +L+ K  +P+VL F KV+VD ++  A  + + AMPTFMF KEGK V
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQV 87          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.236e-14
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  120 EQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQ 386
            + L+ + +  +L+V DF A+WCGPC+ +AP L  +AK+   V+F+K+DVDE + VA  + V AMPT +  K G  +  VVGA +  +++
Sbjct:   13 DALEAAIKGDKLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRE 101          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_CYAME (Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  117 NEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 365
            NE LQ    +++LV+VDF A WCGPCR I P L E+AK+  N+  ++V+ DE  ++AT + + ++PT M  K+G+ VD V+GA
Sbjct:   11 NEVLQ----SEKLVLVDFWAPWCGPCRMIGPILEEIAKEF-NLKVVQVNTDENPNLATFYGIRSIPTLMLFKKGQRVDTVIGA 88          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.450e-14
Identity = 33/75 (44.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  144 TKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 365
            +++LV+VDF A WCGPCR I+P + ELA++ +  V  +K++ DE  S++ ++ + ++PT M  K+GK VD V+GA
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGA 93          
The following BLAST results are available for this feature:
BLAST of CX300181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_EMENI2.487e-1443.53Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO_MYCGA3.248e-1437.08Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIO_COPCM3.248e-1435.56Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
NGLY1_CAEEL3.248e-1437.78Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_CHLTR4.242e-1444.00Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
TRXF_MESCR5.540e-1450.00Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_FUSCU5.540e-1450.00Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
THIO_ECHGR7.236e-1440.45Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_CYAME9.450e-1445.78Thioredoxin OS=Cyanidioschyzon merolae GN=trxA PE=... [more]
THIO_CYACA9.450e-1444.00Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC07007B09SK SaltLeaf1 Citrus clementina cDNA clone C07007B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300181 ID=CX300181; Name=CX300181; organism=Citrus clementina; type=EST; length=390bp
GAGAGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCG
CGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCA
CACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAAC
AGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTA
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