CX300181

Overview
NameCX300181
Unique NameCX300181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 38/71 (53.52%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  144 TKQLVVVDFTASWCGPCRFIAPFLAELAK--KLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIV 347
            T Q VV DF A WCGPC+ IAP  A+ AK   +PN L F K++VD ++ VA  + V AMPTF+F K GK V
Sbjct:   20 TTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.612e-13
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  153 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            LV+VDF A WCGPCR + P L  LA +LP+V   K+++DE    A  + V ++PT +  K+G  V +VVG K +E
Sbjct:   18 LVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKE 92          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   57 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQT 389
            AE+   EEG V      E + E L+ + E  +LV VDF+A+WCGPCR + P    L+ K  +V+FL+VD ++ + +  D  +  +PTF F K  + V +  GA   +L+++
Sbjct:  402 AEIETLEEGLVRVIKDKEEFEEVLKDAGE--KLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERS 510          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 380
            VV+D    WCGPC+ IAP   EL++K  +V+FLK+D + + KS+A +  ++ +PTF  LK+ KIV +V GAK ++L
Sbjct:   97 VVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDL 172          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  153 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            LV+VDF A WCGPC+ + P L  LA +LP V  LK+D+D     A  + V ++PT +  K+GK V++ VG K ++
Sbjct:   18 LVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKD 92          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDED 155          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDED 155          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDED 155          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  153 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            LV++DF A WCGPC+ + P L  L  ++ +VL  KV++D+  + A  + V ++PT +  K+GK VD+VVG K ++
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKD 92          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAEL-AKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            VVVDF A WCGPC+ + P L ++ AK+   V+  KVD+D+   +A ++ V A+PT + +K G +VDK VG K E+
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDED 155          
The following BLAST results are available for this feature:
BLAST of CX300181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_NEUCR1.234e-1353.52Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIO_CHLPN1.612e-1345.33Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
TXND2_MOUSE2.749e-1336.04Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
TRXF_PEA3.591e-1346.05Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
THIO_CHLMU3.591e-1344.00Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIOM_RAT6.125e-1345.33Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE6.125e-1345.33Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN6.125e-1345.33Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_CHLCV8.000e-1341.33Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
THIOM_BOVIN8.000e-1345.33Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]

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Properties
Property NameValue
Genbank descriptionC07007B09SK SaltLeaf1 Citrus clementina cDNA clone C07007B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300181 ID=CX300181; Name=CX300181; organism=Citrus clementina; type=EST; length=390bp
GAGAGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCG
CGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCA
CACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAAC
AGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTA
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