CX300181

Overview
NameCX300181
Unique NameCX300181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300181_ssr1 microsatellite CX300181_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig410 contig Ccv1_Contig410:41..430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  159 VVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEE 377
            +VDF A+WCGPC+ IAP L ELA         LK+DVDE  S A  + V ++PT +  K+G+ VDKVVG + +E
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKE 94          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 31/79 (39.24%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  147 KQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 380
            +++VV+D    WCGPC+ IAP    L++K  +V+FLK+D + E + +A +  +  +PTF  LK+ ++V +V GAK ++L
Sbjct:   90 EKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDL 168          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 28/77 (36.36%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  150 QLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 380
            ++ VVDF A WCGPC+++ PFL +L+++     F+ V+ D+   +A    V A+PT +  ++G+ +D++VGA  + L
Sbjct:   36 KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTL 112          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: TR548_MIMIV (Thioredoxin-like protein R548 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R548 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 3
Query:  138 NETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDV--DELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEELQQT 389
            +E+K LV++DF  +WCGPC+ IAP    +A+K P V F K++   + L ++     + ++PTF F K GK + + V A    L+++
Sbjct:   46 DESKGLVIIDFFTTWCGPCKRIAPDYIRMAEKYPTVSFYKINAENENLANIVAACEIVSLPTFCFFKAGKYIGRFVNADPVGLEKS 131          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.509e-11
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  102 TVEAWNEQLQKSN-ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 365
            TV+  N   Q    ++ + VVVDF A WCGPC+ IAP L E+A ++   V   KV++DE   +A  + V ++PT +  K+G++   +VGA
Sbjct:    2 TVKVDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGA 91          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 30/76 (39.47%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  141 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLP-NVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 365
            E++  V+VDF A WCGPC+ IAP + ELAK+    +   K++ DE   +AT + + ++PT +F K G+  + ++GA
Sbjct:   90 ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGA 165          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 3
Query:  156 VVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKEEL 380
            VV+D    WCGPC+ +AP   +LA++  +V+FLK+D + E K++A +  +  +PTF  LKE  +V +V GAK ++L
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKL 180          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  153 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQ 386
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL +
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDE 97          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  153 LVVVDFTASWCGPCRFIAPFLAELAKKLPNVL-FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAK-KEELQQ 386
            LV+ DF A+WCGPCR +AP L E+ ++    L  +K+DVDE       + V ++PT +  K+G++V+ ++G + KEEL +
Sbjct:   18 LVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDE 97          
BLAST of CX300181 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 29/76 (38.16%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  141 ETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPN-VLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGA 365
            ++ + V+VDF ASWCGPC  + P + +LA       +  K++VDE  ++A  + + ++PT + +K GK+VD++VGA
Sbjct:   18 DSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGA 93          
The following BLAST results are available for this feature:
BLAST of CX300181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
THIO_STAHJ6.772e-1248.65Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
TRXF_BRANA1.155e-1139.24Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
TRX2_SCHPO1.509e-1136.36Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
TR548_MIMIV1.509e-1136.05Thioredoxin-like protein R548 OS=Acanthamoeba poly... [more]
THIO1_CORNE1.509e-1138.89Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
TRXM_SPIOL1.970e-1139.47Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
TRXF_SPIOL1.970e-1142.11Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
THIO_LISMO1.970e-1140.00Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN1.970e-1140.00Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_CHLLT1.970e-1138.16Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]

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Properties
Property NameValue
Genbank descriptionC07007B09SK SaltLeaf1 Citrus clementina cDNA clone C07007B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300181 ID=CX300181; Name=CX300181; organism=Citrus clementina; type=EST; length=390bp
GAGAGAGAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCG
CGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCA
CACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAAC
AGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCCGTTTC
ATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTCCTGTT
TCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTGGGCAG
TGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTGTGGAC
AAGGTGGTTGGAGCAAAGAAAGAGGAACTGCAGCAGACTA
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