CX300183

Overview
NameCX300183
Unique NameCX300183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1257 contig Ccv1_Contig1257:501..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRI1_BRANA (Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.140e-34
Identity = 68/110 (61.82%), Postives = 85/110 (77.27%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 365
            K MEYQN+RGG+V L  I+ P+S+F+HAEKGDALYAME                H+VA++N+D QLADFVESE+L EQ+EAIKKIS+++ QLR VG+GHGVWHFDQMLL+
Sbjct:  145 KFMEYQNQRGGRVTLHPIVSPISDFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQLADFVESEFLGEQIEAIKKISDFITQLRMVGKGHGVWHFDQMLLN 254          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRI2_MAIZE (Ferritin-2, chloroplastic OS=Zea mays GN=FER2 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.062e-33
Identity = 72/110 (65.45%), Postives = 83/110 (75.45%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVG-QGHGVWHFDQMLL 362
            KLMEYQNKRGG+V+LQSI+ PL+EFDH EKGDALYAME                H VA + +D QL DF+ESE+L EQ EAI K+S+YVAQLRRVG +GHGVWHFDQMLL
Sbjct:  139 KLMEYQNKRGGRVRLQSIVAPLTEFDHPEKGDALYAMELTLALEKLVNEKLHSLHGVATRCNDPQLIDFIESEFLEEQGEAINKVSKYVAQLRRVGNKGHGVWHFDQMLL 248          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRI_PHAVU (Ferritin, chloroplastic OS=Phaseolus vulgaris GN=PFE PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.037e-33
Identity = 71/110 (64.55%), Postives = 79/110 (71.82%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 365
            KLM+YQN RGG+V L  I    SEF+H EKGDALYAME                H VA++N D QLADF+ESE+L EQVEAIKKISEYVAQLR VG+GHGVWHFDQ LLH
Sbjct:  140 KLMKYQNTRGGRVVLHPIKNVPSEFEHVEKGDALYAMELALSLEKLVNEKLRSVHSVADRNKDPQLADFIESEFLSEQVEAIKKISEYVAQLRMVGKGHGVWHFDQSLLH 249          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRI3_VIGUN (Ferritin-3, chloroplastic OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.272e-33
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 365
            KL++YQN RGG+V L  I  P SEF+H EKGDALYAME                H VA++N+D QLADF+ESE+L+EQVE+IKKI+EYV QLR VG+GHGVWHFDQ LLH
Sbjct:  146 KLIKYQNIRGGRVVLHPITSPPSEFEHPEKGDALYAMELALSLEKLTNEKLLYVHSVADRNNDAQLADFIESEFLNEQVESIKKIAEYVTQLRLVGKGHGVWHFDQRLLH 255          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRI1_PEA (Ferritin-1, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 6.885e-33
Identity = 69/111 (62.16%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHG 368
            KLM+YQN RGG+V L  I    SEF+H EKGDALYAME                H VA +N+D+++  F+E EYL EQVEAIKKISEYVAQLRRVG+GHGVWHFDQ LLHG
Sbjct:  139 KLMKYQNTRGGRVVLHPIKDVPSEFEHVEKGDALYAMELALSLEKLTNEKLLNVHSVAERNNDLEMTHFIEGEYLAEQVEAIKKISEYVAQLRRVGKGHGVWHFDQRLLHG 249          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRI_MALXI (Ferritin, chloroplastic OS=Malus xiaojinensis PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.993e-33
Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLL 362
            KLM+YQN RGG+V L +I    SEF+H EKGDALYAME                H VA++N+D Q+ADF+ESE+L EQVE+IKKISEYVAQLRRVG+GHGVWHFDQ LL
Sbjct:  141 KLMKYQNTRGGRVVLHAIKNVPSEFEHVEKGDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQMADFIESEFLSEQVESIKKISEYVAQLRRVGKGHGVWHFDQRLL 249          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRI2_SOYBN (Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.993e-33
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGEEVV 380
            +L++YQN RGG+V L  I  P SEF+H+EKGDALYAME                H VA +N+D Q ADF+ESE+L+EQV++IKKI+EYVAQLR VG+GHGVWHFDQ LLH E+ V
Sbjct:  143 QLIKYQNIRGGRVVLHPITSPPSEFEHSEKGDALYAMELALSLEKLTNEKLLHVHSVAERNNDPQXADFIESEFLYEQVKSIKKIAEYVAQLRLVGKGHGVWHFDQKLLHDEDHV 257          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRI1_SOYBN (Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4)

HSP 1 Score: 138.272 bits (347), Expect = 1.174e-32
Identity = 69/109 (63.30%), Postives = 80/109 (73.39%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLL 362
            KLM+YQN RGG+V L  I    SEF+H EKGDALYAME                H VA++N+D Q+ADF+ESE+L EQVE+IKKISEYVAQLRRVG+GHGVWHFDQ LL
Sbjct:  141 KLMKYQNTRGGRVVLHPIKNAPSEFEHVEKGDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQMADFIESEFLSEQVESIKKISEYVAQLRRVGKGHGVWHFDQRLL 249          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRIS_LYMST (Soma ferritin OS=Lymnaea stagnalis PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLL 362
            KLM+YQNKRGG++ LQ I  P    D  E G  L AM+                HK+   + D Q+ADF+ESE+L EQV++IK++S+Y+  L+RVG G G + FD+  L
Sbjct:   66 KLMKYQNKRGGRIVLQDIKKP----DRDEWGTGLEAMQVALQLEKSVNQSLLDLHKLCTSHDDAQMADFLESEFLEEQVKSIKELSDYITNLKRVGPGLGEYIFDKETL 170          
BLAST of CX300183 vs. ExPASy Swiss-Prot
Match: FRIH2_SCHMA (Ferritin-2 heavy chain OS=Schistosoma mansoni GN=SCM-2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 3
Query:   36 KLMEYQNKRGGKVKLQSILMPL-SEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVANKNHDVQLADFVESEYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 365
            KL +YQNKR G+V+   I  P  +EF   E      AM                 H+VA+KN+D  LADF+ESE+LHEQ +AIK+ ++Y+ + +RVG+G G + FD++ L+
Sbjct:   66 KLAKYQNKRVGRVQYSDINGPTKTEFSSLED-----AMNTALGMEKAVSKSLLELHEVASKNNDPALADFIESEFLHEQEDAIKQFADYLTETQRVGKGLGEYLFDKLTLN 171          
The following BLAST results are available for this feature:
BLAST of CX300183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
FRI1_BRANA2.140e-3461.82Ferritin-1, chloroplastic OS=Brassica napus GN=LSC... [more]
FRI2_MAIZE1.062e-3365.45Ferritin-2, chloroplastic OS=Zea mays GN=FER2 PE=1... [more]
FRI_PHAVU4.037e-3364.55Ferritin, chloroplastic OS=Phaseolus vulgaris GN=P... [more]
FRI3_VIGUN5.272e-3361.82Ferritin-3, chloroplastic OS=Vigna unguiculata PE=... [more]
FRI1_PEA6.885e-3362.16Ferritin-1, chloroplastic OS=Pisum sativum PE=1 SV... [more]
FRI_MALXI8.993e-3363.30Ferritin, chloroplastic OS=Malus xiaojinensis PE=3... [more]
FRI2_SOYBN8.993e-3359.13Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI1_SOYBN1.174e-3263.30Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4[more]
FRIS_LYMST1.394e-1743.12Soma ferritin OS=Lymnaea stagnalis PE=2 SV=2[more]
FRIH2_SCHMA1.104e-1440.54Ferritin-2 heavy chain OS=Schistosoma mansoni GN=S... [more]

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Properties
Property NameValue
Genbank descriptionC07007B11SK SaltLeaf1 Citrus clementina cDNA clone C07007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300183 ID=CX300183; Name=CX300183; organism=Citrus clementina; type=EST; length=423bp
AGGAATCAAGTGAAGAGGAAAGAGAGCATGCTGAGAAATTGATGGAATAT
CAGAACAAACGAGGAGGTAAAGTGAAGCTGCAATCAATATTGATGCCTCT
CTCTGAGTTTGATCATGCTGAGAAAGGAGATGCTTTGTATGCCATGGAGC
TTACGCTGTCTCTGGAGAAGCTAACAAATGAGAAACTCCTCAACTTGCAC
AAGGTGGCCAACAAGAACCATGATGTGCAGTTGGCAGATTTCGTTGAAAG
CGAGTATTTACATGAGCAGGTAGAAGCCATCAAAAAGATATCTGAATATG
TTGCTCAGCTGAGAAGAGTTGGCCAGGGGCATGGTGTCTGGCACTTTGAT
CAAATGCTGCTCCATGGGGAGGAAGTCGTCGCATGATGGTGGACACATCT
TGCTTGTCACCTGACTATCCCTA
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