CX300185

Overview
NameCX300185
Unique NameCX300185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:1061..1490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 4.003e-23
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNW 254
            A++VN AF ++A+  +KGIL VCD PLVSVDFRC              MGDDMVKV+AW+DNEWGYSQRVVDLA +VA+ W
Sbjct:  338 AEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.424e-20
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            KTF +EVN A  ++A+  +KGI+   DEPLVS D+R               MGDDM+KV+AW+DNEWGYSQRVVDL +++A+ WK
Sbjct:  332 KTFKEEVNGALLKAANGSMKGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLGEVMASQWK 416          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            KTF +EVN A  ++++  +KGI+   DEPLVS D R               MGDDM+KV+AW+DNEWGYSQRVVDL +++A  WK
Sbjct:  330 KTFKEEVNGALLKASEGAMKGIIKYSDEPLVSCDHRGTDESTIIDSSLTMVMGDDMIKVVAWYDNEWGYSQRVVDLGEVMARQWK 414          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 2.056e-19
Identity = 47/84 (55.95%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    6 TFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            T A++VN    E+A+  LKG+L   D  LVS DFR               MG DMVKVIAW+DNEWGYSQRVVDLA+IVA NWK
Sbjct:  254 TIAEQVNGVLKEAANTSLKGVLEYTDLELVSSDFRGTDCSSTVDGSLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAEIVAKNWK 337          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.629e-16
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWG 206
            KTFA+E+N AF E+A   L G+L+V DEPLVSVDFRC              MG DMVKV+AW+DNEWG
Sbjct:  247 KTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.056e-15
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNW 254
            +T  +EVN A  ++++  LKGIL   +  LVS D++               MG+D+VKV+AW+DNEWGYSQRV+DLA++VA  W
Sbjct:  253 RTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVAEKW 336          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.056e-15
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNW 254
            +T  +EVN A  ++++  LKGIL   +  LVS D++               MG+D+VKV+AW+DNEWGYSQRV+DLA++VA  W
Sbjct:  253 RTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVAEKW 336          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.756e-13
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   15 QEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLA 233
            +EVNAAF  +A+ ELKGIL   +EPLVS+D+                M  +MVKV++W+DNE GYS RVVDLA
Sbjct:  254 EEVNAAFKAAAEGELKGILGYSEEPLVSIDYNGCTASSTIDALSTMVMEGNMVKVLSWYDNETGYSNRVVDLA 326          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.905e-13
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVA 245
            A+EVNAA  E+A+ +LKGIL   +EPLVS D+                M   MVKVI+W+DNE GYS RVVDLA  +A
Sbjct:  254 AEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVMEGSMVKVISWYDNESGYSNRVVDLAAYIA 331          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.093e-12
Identity = 38/82 (46.34%), Postives = 45/82 (54.88%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            A+EVN AF  +A   + G+L   DEPLVS D+                M D  VKV+AW+DNEWGYS RVVDL   VA   K
Sbjct:  254 AEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVAARMK 335          
The following BLAST results are available for this feature:
BLAST of CX300185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
G3PB_ARATH4.003e-2360.49Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_GRAVE1.424e-2051.76Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_CHOCR7.067e-2050.59Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY32.056e-1955.95Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_SCEVA3.629e-1657.35Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_ANAVT1.056e-1545.24Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP1.056e-1545.24Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P1_BACCE3.756e-1350.68Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P1_BACSU4.905e-1350.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P2_BACSU1.093e-1246.34Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC07007C01SK SaltLeaf1 Citrus clementina cDNA clone C07007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300185 ID=CX300185; Name=CX300185; organism=Citrus clementina; type=EST; length=430bp
AGAAAACCTTCGCACAAGAGGTGAACGCCGCTTTCACAGAAAGCGCTGAC
AATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGT
CGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACAC
TTGACATGGGAGACGACATGGTTAAGGTGATTGCATGGCATGACAATGAA
TGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAA
CTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAA
CGATGGTCTTGTTTTTCATTTTTGGCTCCCCCATTTATTGTTCTGCGTCT
TAGAATTTGTAGAATGTATAACACTATCTTATTATGGAACCTTTTTCCTT
TGCCTGTCATTAATCATTATGCAATAAAAT
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