CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.967e-33
Identity = 73/117 (62.39%), Postives = 79/117 (67.52%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 349
            VLP LKGKLNGIALRVPTPN           K    AE+VN AFR++A   LKG+L VCD PLVSVDFRC              MG DMVKV+AWYDNEWGYSQRVVDLAD+VAN W
Sbjct:  305 VLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 421          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.841e-31
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            V+P L GKLNGIALRVPTPN          SKKTF EEVN A  ++A+  +KGI+   DEPLVS D+R               MGDDM+KV+AWYDNEWGYSQRVVDL +++A+ WK
Sbjct:  300 VVPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSMKGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLGEVMASQWK 416          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 64/117 (54.70%), Postives = 78/117 (66.67%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            V+P+LKGKLNGIALRVPTPN          +KKTF EEVN A  ++++  +KGI+   DEPLVS D R               MGDDM+KV+AWYDNEWGYSQRVVDL +++A  WK
Sbjct:  298 VVPSLKGKLNGIALRVPTPNVSVCDVVMQVNKKTFKEEVNGALLKASEGAMKGIIKYSDEPLVSCDHRGTDESTIIDSSLTMVMGDDMIKVVAWYDNEWGYSQRVVDLGEVMARQWK 414          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 1.559e-30
Identity = 67/117 (57.26%), Postives = 75/117 (64.10%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            V+P L+GKLNGIALRVPTPN           K T AE+VN   +E+A+  LKG+L   D  LVS DFR               MG DMVKVIAWYDNEWGYSQRVVDLA+IVA NWK
Sbjct:  221 VIPELQGKLNGIALRVPTPNVSVVDLVVQVEKNTIAEQVNGVLKEAANTSLKGVLEYTDLELVSSDFRGTDCSSTVDGSLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAEIVAKNWK 337          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.544e-28
Identity = 61/100 (61.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWG 301
            VLP LKGKLNGIALRVPTPN           KKTFAEE+N AF+E+A   L G+L+V DEPLVSVDFRC              MG DMVKV+AWYDNEWG
Sbjct:  215 VLPKLKGKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.594e-27
Identity = 58/116 (50.00%), Postives = 75/116 (64.66%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 349
            V+P LKGKLNG+ALRVPTPN           K+T  EEVN A +++++  LKGIL   +  LVS D++               MG+D+VKV+AWYDNEWGYSQRV+DLA++VA  W
Sbjct:  221 VIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVAEKW 336          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.594e-27
Identity = 58/116 (50.00%), Postives = 75/116 (64.66%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 349
            V+P LKGKLNG+ALRVPTPN           K+T  EEVN A +++++  LKGIL   +  LVS D++               MG+D+VKV+AWYDNEWGYSQRV+DLA++VA  W
Sbjct:  221 VIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVAEKW 336          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.148e-23
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP LKGKLNG A+RVPTPN          +++  AEEVNAA +E+A+ +LKGIL   +EPLVS D+                M   MVKVI+WYDNE GYS RVVDLA  +A
Sbjct:  219 VLPELKGKLNGGAMRVPTPNVSLVDLVAELNQEVTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVMEGSMVKVISWYDNESGYSNRVVDLAAYIA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 106.686 bits (265), Expect = 4.112e-23
Identity = 56/114 (49.12%), Postives = 70/114 (61.40%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            VLP LKGKLNG+A+RVPTPN           K+   EEVNAA + +A+ ELKGIL+  +EPLVS D+                +   MVKV++WYDNE GYS RVVDLA  +A+
Sbjct:  219 VLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 1.196e-22
Identity = 56/109 (51.38%), Postives = 67/109 (61.47%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 328
            VLP LKGKLNG A+RVPT N           K+   EEVNAAF+ +A+ ELKGIL   +EPLVS+D+                M  +MVKV++WYDNE GYS RVVDLA
Sbjct:  218 VLPELKGKLNGGAVRVPTANVSLVDLVVELDKEVTVEEVNAAFKAAAEGELKGILGYSEEPLVSIDYNGCTASSTIDALSTMVMEGNMVKVLSWYDNETGYSNRVVDLA 326          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3PB_SPIOL1.967e-3362.39Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_GRAVE1.841e-3155.56Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_CHOCR3.141e-3154.70Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY31.559e-3057.26Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PA_SCEVA5.544e-2861.00Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_ANAVT3.594e-2750.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP3.594e-2750.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P1_BACSU3.148e-2351.33Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_BACST4.112e-2349.12Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P1_BACCE1.196e-2251.38Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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