CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.854e-16
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G++ RVPT +           K    + + +A + +++ +LKGI+   +E LVS DF                + D+ VK++AWYDNEWGYS RV+DL
Sbjct:  222 VLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDL 329          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.854e-16
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 346
            VLP L+GKL G+A RVPT +           K+T  +E+    +++++ +LKG+L   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL + VA N
Sbjct:  218 VLPQLQGKLTGMAFRVPTVDVSVVDLTVKLQKETTYDEIKKVIKQASEGKLKGVLGYTEDAVVSSDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAKN 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.727e-16
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            V+P L GKL G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF                + D  VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMAS 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.727e-16
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPTPN           K    +++    + +AD  LKGIL   ++ +VS DF                + D  VK+++WYDNE+GYS RVVDL
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.727e-16
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            V+P L GKL G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF                + D  VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVYMAS 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.727e-16
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 328
            VLP LKGKLNG ++RVP P            KK    EE+N+  R++++  ELKGIL   ++P+VS D +               + +   K+++WYDNE+GYS RVVDLA
Sbjct:  220 VLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLA 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF                + D  VK+I+WYDNE+GYS RVVDL
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+PAL GKL G+A RVPTP+           K    EE+ AA + +A   LKGIL   ++ +VS DF                + ++ VK+++WYDNE+GYS RVVDL
Sbjct:  221 VIPALNGKLTGMAFRVPTPDVSVVDLTCRLGKGASYEEIKAAVKAAASGPLKGILEYTEDEVVSSDFVGSTSSSIFDAKAGISLNNNFVKLVSWYDNEFGYSCRVVDL 328          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF                + D  VK+I+WYDNE+GYS RVVDL
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF                + D  VK+I+WYDNE+GYS RVVDL
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 325          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3PC_ORYSI2.854e-1637.96Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CANGA2.854e-1636.52Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P_MUSPF3.727e-1636.84Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_CHICK3.727e-1638.89Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_CANFA3.727e-1636.84Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P_BORBU3.727e-1640.54Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P_SPECI4.868e-1637.96Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_SCHMA4.868e-1640.74Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_RABIT4.868e-1637.96Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_PIG4.868e-1637.96Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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