CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.358e-16
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            VLPAL GKL G+A RVP P+           K    +E+ A  +  ++NELKGI++  +E +VS DF                +    VK++AWYDNE+GY+ ++V+LA  V +
Sbjct:  220 VLPALNGKLTGMAFRVPVPDVSVVDLTCTLEKDATYDEICAEIKRGSENELKGIMTYTNEDVVSSDFLSTTSTCNFDSKAGIMLNSRFVKLVAWYDNEFGYANKLVELAKYVGS 333          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.358e-16
Identity = 40/113 (35.40%), Postives = 66/113 (58.41%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L+GKL G+A RVPT +          +K    +E+ AA +++++ E+KGIL+  ++ +VS DF                +    VK+++WYDNE+G+S RVVD+ ++V+
Sbjct:  218 VLPELEGKLTGMAFRVPTVDVSVVDLTVRFAKDVTYDEIKAAIKKASEGEMKGILAYTEDAVVSTDFLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVELVS 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 45/113 (39.82%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLPAL GKL G+++RVPT +           K T  E++ A  +++A+  L GIL   DE +VS DF                +    VK+++WYDNE+GYS RVVDL   VA
Sbjct:  219 VLPALAGKLTGMSMRVPTTDVSVVDLTVNLKKPTTYEDICATMKKAAEGPLAGILGYTDEAVVSSDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPTP+           K    +E+ AA +E+A   +KGIL   ++ +VS DF                +  + VK+IAWYDNE+GYS RVVDL
Sbjct:  225 VIPDLNGKLTGMASRVPTPDVSVVDLTCRLQKGASMDEIKAAVKEAAAGPMKGILEYTEDQVVSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDL 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G++LRVPT +           K    EE++ A + +++ ELKGIL   ++ +VS DF                +    VK+I+WYDNE+GYS RVVDL + VA
Sbjct:  219 VIPELNGKLTGMSLRVPTVDVSVVDLTVRLKKSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A+RVPT N           K    +E+  A +E+++  L GIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RV+DL   +A
Sbjct:  219 VIPELNGKLTGMAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P+ KGKL G++ RVPTP+          ++ T  +E++AA ++++   +KGIL   DE LVS DF    R                     KV++WYDNEWGYS RVVDL
Sbjct:  236 VIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAALKKASQTYMKGILGFTDEELVSSDFINDARSSIYDSKATLQNNLPGEKRFFKVVSWYDNEWGYSHRVVDL 347          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.084e-15
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPTP+           K    +++    + +AD  +KGIL+  ++ +VS DF                +  + VK+++WYDNE+GYS RVVDL   +A
Sbjct:  226 VIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.084e-15
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L+GKL G+A RVPT +          +K+   +E+ AA ++++  +LK ++   ++ +VS DF                +    VKV+AWYDNE+GYS+RVVDL + VA
Sbjct:  217 VLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKEATYDEIKAAVKKASQGKLKNVVGYTEDSVVSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.084e-15
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPTP+           K    +++    + +AD  +KGIL+  ++ +VS DF                +  + VK+++WYDNE+GYS RVVDL   +A
Sbjct:  226 VIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P1_GIALA6.358e-1636.84Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P1_CANGA6.358e-1635.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_PICAN8.304e-1639.82Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_ONCVO8.304e-1640.74Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_DEBHA8.304e-1638.94Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_COCHE8.304e-1635.40Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3PG_CRIFA8.304e-1639.29Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P4_CAEEL1.084e-1535.40Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P1_KLULA1.084e-1537.17Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P1_CAEEL1.084e-1535.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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