CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPTPN           K    +++    + +++  LKGIL   ++ +VS DF                + D+ VK+++WYDNE+GYS RVVDL
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLQKPAKYDDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_TREPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Treponema pallidum GN=gap PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP+ +GKL G+A RVPTP            K+T   ++NA  ++++++ L+G+L  CDE +VS D                           KV++WYDNEWGYS RVVDL   ++
Sbjct:  231 VLPSTRGKLTGMAFRVPTPTGSVVDLTFRTEKETSVADLNAMLKKASESYLRGVLQYCDEDIVSADVIHNQYSSIYDSRATLQNNLPNEKRFFKVVSWYDNEWGYSNRVVDLLKFIS 347          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 44/115 (38.26%), Postives = 58/115 (50.43%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 346
            VLP L G+L+  ALRVP P            + T  EEV  A+  +A    KG+LS  D PLVS D                 +    VKV+ WYDNEWGYS R++DLA ++ ++
Sbjct:  220 VLPELAGRLDAFALRVPVPTGSVTDLTVTTRRGTSVEEVKEAYAAAASGPYKGLLSYVDAPLVSTDI--VGDPASLFDAGLTRVCGPQVKVVGWYDNEWGYSNRLIDLATLIGSS 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 42/113 (37.17%), Postives = 58/113 (51.33%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P+L GKLNG+A RVPT +           K    +E+  A +E+++   KGIL   +E +VS DF                +    VK+I+WYDNEWGYS+R  DL    A
Sbjct:  219 VIPSLNGKLNGLAFRVPTVDVSVVDLVVRLEKPASYDEIKQAIKEASETTHKGILGYTEEKVVSTDFTGNDNSSIFDRDAGIALNKTFVKLISWYDNEWGYSRRCCDLLGYAA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 2
Query:    5 LPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            LP LKGKL G+A RVP  +           K T  +++  A +++++ +LKGIL   DE +VS DF                + D   K++AWYDNE GY+ R+VDL + V  N K
Sbjct:  220 LPELKGKLTGMAFRVPIEDVSVVDLTVRLDKSTTYDDICKAMKQASETDLKGILDYTDEQVVSSDFIGSEYSSIFDALAGIALNDRFFKLVAWYDNETGYATRIVDLLEYVEKNSK 335          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L+GKL G+A RVPT +          +K+T  +E+    + +A+ +LKG+L   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL + VA
Sbjct:  218 VLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPTP+           K    +++    + +AD  +KGIL+  ++ +VS DF                +    VK+++WYDNE+GYS RVVDL   +A
Sbjct:  226 VIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L+GKL G+A RVPT +          +K+T  +E+    + +A+ +LKG+L   ++ +VS DF                +    VK+++WYDNE+GYS RVVDL + VA
Sbjct:  218 VLPELQGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPTP+           K    +++    + +AD  +KGIL+  ++ +VS DF                +    VK+++WYDNE+GYS RVVDL   +A
Sbjct:  226 VIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPTP+           K    +++    + +A+  LKG+L+  ++ +VS DF                +  + VK+I+WYDNE+GYS RVVDL   +A
Sbjct:  226 VIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKRVIKAAAEGPLKGVLAYTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P_TRISI1.416e-1537.04Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_TREPA1.416e-1535.90Glyceraldehyde-3-phosphate dehydrogenase OS=Trepon... [more]
G3P_STRAE1.416e-1538.26Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_PHACH1.416e-1537.17Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_CHLPN1.416e-1537.07Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P3_YEAST1.416e-1537.17Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P3_CAEEL1.416e-1535.40Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_YEAST1.416e-1537.17Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P2_CAEEL1.416e-1535.40Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P2_CAEBR1.416e-1535.40Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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