CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-15
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GK+ G+++RVPT N          +K    +EV AA +E+++  LKGIL+  ++ +VS D                 +  + VKV++WYDNE+GYS+RVVDL
Sbjct:  218 VIPELAGKVTGMSVRVPTVNVSLVDFTVRFAKDVTYDEVKAAIKEASEGPLKGILAYTEDDIVSTDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVP P+           K    E++ AA +++++  LKGIL   ++ +VS DF                +  + VK+I+WYDNE+GYS RVVDL
Sbjct:  218 VIPHLNGKLTGMAFRVPNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 41/108 (37.96%), Postives = 54/108 (50.00%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPTPN           K    +E+    + +AD  +KGIL   +  +VS DF                + D  VK++ WYDNE+GYS RV DL
Sbjct:  218 VIPELNGKLTGMAFRVPTPNVSVVDLTVRLEKPAKYDEIKKVVKAAADGPMKGILGYTEHQVVSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            V+P+ +GKL G++ RVPTP+          ++ T  +E++AA + ++   +KGIL   DE LVS DF    R                     K+++WYDNEWGYS RVVDL   +A+
Sbjct:  235 VIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMAS 352          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPTP+           K    +++    + +A+  LKG+L+  ++ +VS DF                +  + VK+I+WYDNE+GYS RVVDL   +A
Sbjct:  226 VIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPASLDDIKKVVKAAAEGPLKGVLAYTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.850e-15
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+PAL GKL G+A RVPTP+          SK    +E+  A +++++  +KG+L    + +VS DF                +    VK+IAWYDNE+GYS RVVDL
Sbjct:  219 VIPALNGKLTGMAFRVPTPDVSVVDLTVNLSKGASYDEIKQAIKKASETTMKGVLGYTSDAVVSSDFVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDL 326          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.416e-15
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GK+ G+A RVPTPN           K    +++ AA + +++  +KGIL    + +VS DF                + ++ VK+++WYDNE GYS RVVDL
Sbjct:  218 VIPELNGKITGMAFRVPTPNVSVVDLTCRLQKPAKYDDIKAAIKTASEGPMKGILGYTQDQVVSTDFNGDTHSSIFDADAGIALNENFVKLVSWYDNECGYSNRVVDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.416e-15
Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+++RVPT N           K    +E+  A + +AD  L GIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RV+DL   +A
Sbjct:  219 VIPDLNGKLTGMSMRVPTSNVSVVDLTVRLEKGATYDEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.416e-15
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A+RVPT N           K    +E+  A +E+++  L GIL   ++ +V+ D                 +  + VK+++WYDNEWGYS+RV+DL   +A
Sbjct:  219 VIPELNGKLTGMAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.416e-15
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL  +++RVPT N           K    +E+  A +E+A+  LKG+L+  ++ +VS D                 + ++ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  220 VIPELNGKLTDMSMRVPTTNVSVVDLTARIEKGASYDEIKQAIKEAAEGPLKGVLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVA 332          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P1_TRIKO1.416e-1537.96Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P_RHIMI1.850e-1537.96Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P_DANRE1.850e-1537.96Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3PG_TRYCR1.850e-1536.44Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P3_CAEBR1.850e-1535.40Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P1_RHIRA1.850e-1538.89Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_XENLA2.416e-1536.11Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]
G3P_PHANO2.416e-1535.40Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_CURLU2.416e-1534.51Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COLGL2.416e-1535.40Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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