CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.416e-15
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P+ KGKL G++ RVPTP+          ++ T  +E++ A +++A   +KGIL   DE LVS DF    R                     KV++WYDNEW YS RVVDL   +A
Sbjct:  236 VIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMA 352          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.416e-15
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            VLPAL GKL G+A RVPT +           K+   +E+ AA +E ++ +LKGI    ++ +VS DF                +  + VK+++WYDNE GYS RVVDL   +A+
Sbjct:  222 VLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEATYDEIKAAIKEESEGKLKGIPGHTEDDVVSTDFIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIAS 335          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.155e-15
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPT +           K+T  EE+ +  + +++ +LKG+L   ++ +VS DF                +    VK+I+WYDNE+GYS RVVDL   VA
Sbjct:  219 VIPELNGKLTGLAFRVPTVDVSVVDLTVNLKKETTYEEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.155e-15
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRV 316
            V+P L GKL G+A RVPTPN           K    E++    +++++  LKGIL   ++ +VS DF+               + D+ VK+I+WYDNE+GYS RV
Sbjct:  208 VIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFKSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRV 312          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.155e-15
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPTPN          SK    +++ AA + ++++  LK IL   ++ +VS DF                + D  VK+IAWYDNE+GYS RVVDL
Sbjct:  219 VIPELNGKLTGMAFRVPTPNVSVVDLTCKLSKPATYDQIKAAVKRASESSALKRILEYTEDQVVSTDFLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDL 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.121e-15
Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESAD-----NELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            VLPAL GKL G+A RVPTPN           K    + +  A +++A+      ELKG+L   ++ +VS DF                + D  VK+++WYDNE GYS +V+DL   + N
Sbjct:  218 VLPALNGKLTGMAFRVPTPNVSVVDLTVNLEKPASYDAIKQAIKDAAEGKTFNGELKGVLGYTEDAVVSTDFNGCALTSVFDADAGIALTDSFVKLVSWYDNETGYSNKVLDLVAHIYN 336          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.382e-15
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G++LRVPT +                E++ A  + ++++ ELKGIL   DE +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   VA
Sbjct:  219 VIPELNGKLTGMSLRVPTVDVSVVDLTVRIKNGASYEDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVA 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.382e-15
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P LKGKL G+A RVPTP+          ++ T    +  A + +A   + GIL+  ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL
Sbjct:  279 VIPDLKGKLTGMAFRVPTPDVSVVDLTCRLAQPTPYSAIKDAIKAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDL 386          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.382e-15
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G+A RVPTP+           K    +E+ A  ++++++E LKGIL   ++ +VS DF                +    VK+I+WYDNE+GYS RVVDL   VA
Sbjct:  220 VIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.029e-15
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            V+P+L GKL G++ R+PT +           K    +++    +++++ ELKGIL   ++ +VS DF                + D  VK+I+WYDNE+GYS+RV DL   VA   K
Sbjct:  219 VIPSLNGKLTGMSFRIPTSDVSVVDLVVRLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAKKDK 335          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3PG_LEIME2.416e-1537.61Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PC_PETHY2.416e-1537.72Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PICPA3.155e-1537.17Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_MESAU3.155e-1537.14Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ECHMU3.155e-1540.37Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P_HAEIN4.121e-1536.13Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P_YARLI5.382e-1539.47Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3PT_BOVIN5.382e-1537.96Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P3_RHIRA5.382e-1538.60Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P_CRYCU7.029e-1534.19Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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