CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_HALVA (Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis GN=gap PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 40/112 (35.71%), Postives = 61/112 (54.46%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 337
            VLP L+GKL+G+A+RVP PN                 +VNAAF ++A  EL+G+L V  + +VS D                 +   M K++ WYDNE+G+S R++D+A+ +
Sbjct:  223 VLPELEGKLDGMAIRVPVPNGSITEFVVDLDDDVTESDVNAAFEDAAAGELEGVLGVTSDDVVSSDI-LGDPYSTQVDLQSTNVVSGMTKILTWYDNEYGFSNRMLDVAEYI 333          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L GKL G++LR+PT +           K    EE+  A +++++  LKG+L   ++ +VS DF                +    VK+I+WYDNE+GYS +VVDL + VA
Sbjct:  219 VIPELNGKLTGMSLRLPTTDVSVVDLTVRLKKAASYEEIAPAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L GKL GIA RVPT N           K     E+    + +++ ++KGIL   ++ +VS DF                +  +  K+I+WYDNE GYS +V+DL ++VA
Sbjct:  218 VLPNLNGKLTGIAFRVPTANVSVVDLTVRYKKTATYNEICEVVKNASEQKMKGILGYTEDEVVSTDFNGKELTSIFDAKAGLSLNKNFAKLISWYDNETGYSSKVLDLVELVA 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRE-SADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P+L GKL G+++RVPT N           K    E++    +  S + ELKGIL   ++ +VS D                 + +  +K+++WYDNEWGYS+RVVDL
Sbjct:  220 VIPSLNGKLTGMSMRVPTANVSVVDLTCRTEKAVTYEDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDL 328          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPT N           K    +++    +++ D  LKG+L   +  +VS DF                + D  VK+++WYDNE+GYS RVVDL
Sbjct:  248 VIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKRVVKQACDGPLKGMLGYTEHQVVSSDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDL 355          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_IDILO (D-erythrose-4-phosphate dehydrogenase OS=Idiomarina loihiensis GN=epd PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.045e-14
Identity = 38/113 (33.63%), Postives = 58/113 (51.33%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            +LP L+G+   IA+RVPT N          +     E++N   RE ++ +L GIL   +EPLVS+DF                    +VK++ W DNEWG++ R++D A  +A
Sbjct:  224 ILPHLEGRFEAIAVRVPTTNVTAMDLSVTLNSDATIEQINQVLREQSERQLAGILDYTEEPLVSIDFNHDPHSSIVDGTQTRVSHKRLVKLLCWCDNEWGFANRLLDTAKTMA 336          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P LKGKL G+A RVPTP+          ++      +  A + +A   + GIL+  ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL
Sbjct:  293 VIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAIKAAAKGPMAGILAYTEDEVVSTDFVGDSHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDL 400          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P LKGKL G+A RVPTP+          ++      +  A + +A   + GIL+  ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL
Sbjct:  292 VIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDL 399          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L+GKL G+A RVPT +           K    +E+ AA ++ ++ +LK ++   ++ +VS DF                +    VK++AWYDNE+GYS RVVDL + VA
Sbjct:  217 VLPELQGKLTGMAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_ALTMD (D-erythrose-4-phosphate dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=epd PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 40/112 (35.71%), Postives = 54/112 (48.21%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 337
            +LP   GK   IA+RVPT N            K   E+VN A R +    L+GIL   +EPLVSVDF                    +VK + W DNEWG++ R++D A ++
Sbjct:  221 ILPKFAGKFEAIAVRVPTINVTAMDLSVTLQSKVTIEQVNQALRSAKAGRLQGILDYTEEPLVSVDFNHDPHSCIVDGTQTRVSHKQLVKTLVWCDNEWGFANRMLDTAKVM 332          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P_HALVA2.045e-1435.71Glyceraldehyde-3-phosphate dehydrogenase OS=Haloar... [more]
G3P_CANAL2.045e-1435.40Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_BUCAP2.045e-1435.40Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_ASPOR2.045e-1435.78Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P1_JACOR2.045e-1436.11Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
E4PD_IDILO2.045e-1433.63D-erythrose-4-phosphate dehydrogenase OS=Idiomarin... [more]
G3PT_MACFA2.671e-1437.04Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_HUMAN2.671e-1437.04Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_KLUMA2.671e-1436.28Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
E4PD_ALTMD3.489e-1435.71D-erythrose-4-phosphate dehydrogenase OS=Alteromon... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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