CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.556e-14
Identity = 39/108 (36.11%), Postives = 55/108 (50.93%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P L GKL G+A RVPT N           K    +++    +++++  LKGIL   +  +VS D                 + D  VK+I+WYDNE+GYS RVVDL
Sbjct:  220 VIPELNGKLTGMAFRVPTANVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDLNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14
Identity = 38/108 (35.19%), Postives = 55/108 (50.93%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P+L GKL G++ RVPT +           K    E++    +E+++   KGI+   +E +VS DF                +  + VK+I WYDNEWGYS RV DL
Sbjct:  218 VIPSLNGKLTGLSFRVPTIDVSVIDLVVRLEKPASYEDIKKTVKEASEGAYKGIIEYTEEQVVSADFIGHHASSIFDAQAGIQLNPNFVKLIVWYDNEWGYSARVCDL 325          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.951e-14
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L GKL G+A RVP  N           K     E+    ++++  E+KGI+   ++ +VS DF                +  + VK+IAWYDNE GYS +V+DL  +V+
Sbjct:  218 VLPNLNGKLTGMAFRVPVSNVSVVDLTVRYKKSATYSEICQKIQQASQKEMKGIMGYTEDEVVSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVS 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 42/114 (36.84%), Postives = 60/114 (52.63%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 343
            VLP LKGKL+G ALRVP               +   E +NAA +E+A  E    L+  +EPLVS D                 +  + VKV++WYDNEWGY+ +++ L ++VA+
Sbjct:  220 VLPELKGKLDGYALRVPVITGSATDLTFNTKSEVTVESINAAIKEAAVGEFGETLAYSEEPLVSTDI-VHDSHGSIFDAGLTKVSGNTVKVVSWYDNEWGYTCQLLRLTELVAS 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 41/112 (36.61%), Postives = 58/112 (51.79%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            V+P+ +GKL G+A RVPT +          ++ T  +E++AA + ++   +K IL   DE LVS DF    R                     K+++WYDNEWGYS RVVDL
Sbjct:  235 VIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDL 346          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 40/98 (40.82%), Postives = 51/98 (52.04%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNE 295
            V+PAL GKL G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE
Sbjct:  207 VIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.015e-13
Identity = 36/113 (31.86%), Postives = 58/113 (51.33%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P L  KL G++ RVPT +           K    +E+ A  +  +   LKG+L   ++ +V+ DFR               +    +KV++WYDNEWGYS +V+++A +VA
Sbjct:  219 VIPQLNKKLTGMSFRVPTSDVSVVDLTVELEKAASYDEICAEMKAQSQGALKGVLGYTEDKVVATDFRGDARTSIFDAEAGIALDGTFIKVVSWYDNEWGYSNKVLEMARVVA 331          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_PSEA6 (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=epd PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.731e-13
Identity = 39/108 (36.11%), Postives = 52/108 (48.15%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP   GK   IA+RVPT N            K   ++VN A +   +  L GIL   +EPLVSVDF                    +VK++ W DNEWG+S R++D+
Sbjct:  221 VLPKFAGKFEAIAVRVPTINVSAMDLSVTLDAKVTIDDVNQALKTVKNGRLNGILDFTEEPLVSVDFNHDAHSCIVDGTQTRVSHKQLVKLLVWCDNEWGFSNRMIDI 328          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P+L GKL G++ RVPT +           K    EE+    ++++++ ELKGIL   ++ +VS DF                +  + VK+++WYDNE+GYS+RV DL   +A
Sbjct:  219 VIPSLNGKLTGMSFRVPTSDVSVVDLVCRIEKGASYEEIKNVIKKASESPELKGILGYTEDAVVSTDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIA 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 47/121 (38.84%), Postives = 62/121 (51.24%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNE-------LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            V+P LKGKL+G A RVP P+          +K  +  EEVN  FRE+A          LK IL  C++P+VS D                 + D++V + AWYDNEWGYS R+ DL   +A
Sbjct:  219 VIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDI-VGNPHSAIFDAPLTQVIDNLVHIAAWYDNEWGYSCRLRDLVIYLA 338          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P_PONAB4.556e-1436.11Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_LYOSH5.951e-1435.19Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3P_BUCAI5.951e-1434.51Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_CORGL7.772e-1436.84Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
G3PG_TRYBB7.772e-1436.61Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P2_DROSU7.772e-1440.82Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P_RALSO1.015e-1331.86Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
E4PD_PSEA61.731e-1336.11D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
G3P_CRYNE2.261e-1334.21Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_AQUAE2.261e-1338.84Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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