CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L GKL+G ++RVP P           ++    +EV  A+R +A   L G+L   ++PLVS D                  G   +KV+AWYDNEWG+S RV+D   ++A
Sbjct:  219 VLPNLDGKLSGDSIRVPVPVGSIVELNTTVARDVTRDEVLDAYRAAAQGPLAGVLEYSEDPLVSSDITGNPASSIFDSELTRVDGRH-IKVVAWYDNEWGFSNRVIDTLQLLA 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 41/116 (35.34%), Postives = 57/116 (49.14%), Query Frame = 2
Query:    5 LPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            LP LKGKL G+A RVP  +          S  T  E +  A + +A+  +K I+   +E +VS DF                + D   K++AWYDNE GY+ R+VDL + V  N K
Sbjct:  219 LPELKGKLTGMAFRVPVADVSVVDLTVKLSSATTYEAICEAVKHAANTSMKNIMYYTEEAVVSSDFIGCEYSSVFDAQAGVALNDRFFKLVAWYDNEIGYATRIVDLLEYVQENSK 334          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.038e-13
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = 2
Query:    5 LPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE----LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            +P L+GKL G+A RVPT +           K+T  ++V  A R++AD +     KGI+   +E +VS DF                +    +K++AWYDNEWGY++RV D    VA
Sbjct:  219 IPDLEGKLTGLAFRVPTLDVSVVDLVVRLEKETSYDDVKKAMRDAADGKHPGIEKGIVDYTEEDVVSTDFVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYARRVCDEVVYVA 334          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.579e-13
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 2
Query:    5 LPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 352
            LP LKGKL G+A RVP  +          S  T  E V  A + +A   ++ I+   +E +VS DF                + D   K+IAWYDNE GY+ R+VDL + +  N K
Sbjct:  220 LPELKGKLTGMAFRVPVADVSVVDLTVKLSSATTYEAVCEAVKHAASTSMRNIMHYTEEAVVSSDFIGCEYSSVFDAQAGVALNDRFFKLIAWYDNEIGYATRIVDLLEYIQGNSK 335          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHEAM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=epd PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.579e-13
Identity = 38/109 (34.86%), Postives = 52/109 (47.71%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 328
            +LP +K K   I++RVPT N            +     VNAA + +AD    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D A
Sbjct:  221 ILPQMKDKFEAISVRVPTINVTAIDLSVTLDTRVDIATVNAALKAAADGSASGILGYTDEPLVSCDFNHDPRSSVVDGTQTRVSAGHLVKMLLWCDNEWGFANRMLDTA 329          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.579e-13
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP   GK   IA+RVPT N           KK    +VN A + ++   L GIL   +EPLVSVDF                   ++VK++ W DNEWG++ R++D
Sbjct:  221 ILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.579e-13
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP   GK   IA+RVPT N           KK    +VN A + ++   L GIL   +EPLVSVDF                   ++VK++ W DNEWG++ R++D
Sbjct:  221 ILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 328
            VLP L GKL G+A+RVP  N          ++ T  +EVN   RE+++     +L    +PLVSVDF                 G  +VK +AWYDNEWG+S R++D A
Sbjct:  221 VLPELAGKLTGLAVRVPVINVSLVDLTVQVARDTSVDEVNRLLREASEGS--PVLGYNTQPLVSVDFNHDPRSSIFDANHTKVSGR-LVKAMAWYDNEWGFSNRMLDSA 326          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: E4PD_SHEFN (D-erythrose-4-phosphate dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=epd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 322
            +LP +K K   I++RVPT N           KK   E++N+  + +++    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  221 ILPHMKDKFEAISVRVPTINVTAIDLSVTLEKKVNIEQINSVLQRASNGSFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGHLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.466e-12
Identity = 33/113 (29.20%), Postives = 61/113 (53.98%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L GKL GIA R+PT N           K    E++    + ++++++K ++   ++ +VS DF                + ++ +K+++WYDNE GYS +V+DL++ ++
Sbjct:  218 VLPELNGKLTGIAFRIPTANVSVVDLTVRNKKIATYEDICQIIKYASNHDMKEVIGYTEDHVVSSDFNGNTLTSIFDAKAGLSLNNNFIKLVSWYDNECGYSSKVLDLSEFIS 330          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P_STRAU2.953e-1336.28Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_CHLTR3.857e-1335.34Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P1_AGABI5.038e-1335.34Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_CHLMU6.579e-1335.34Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
E4PD_SHEAM6.579e-1334.86D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_AERS46.579e-1335.51D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH6.579e-1335.51D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_PSEAE8.593e-1338.53Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
E4PD_SHEFN8.593e-1332.71D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_BUCBP1.466e-1229.20Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
back to top