CX300193

Overview
NameCX300193
Unique NameCX300193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:966..1395. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.617e-19
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 346
            V+P LKGKL+G ALRVP P           S +   +E+NAAF+ +A+  LKGIL   D P+VS D                 + DD  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  225 VMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 2.112e-19
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 337
            V+P +KGKL+G+A+RVPTP+           K+T  EEVNA  +E+ +  LKGI+   DEP+VS D                 +G  +VKV +WYDNE+GYS RVVD  +++
Sbjct:  219 VVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.602e-19
Identity = 50/110 (45.45%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 331
            VLP ++GKL+G+ALRVPT N           +     +VN AF+ +   +L G+L V + PLVSVDF                MG + VKVIAWYDNEWGYS RVV++AD
Sbjct:  220 VLPEVEGKLHGMALRVPTKNVSLVDLVVDLEQNVTVTQVNDAFKNA---DLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVAD 326          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 47/108 (43.52%), Postives = 61/108 (56.48%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP L GKL G+A RVPT +          +K    E++ AA +E ++  LKGIL   DE LVS DF+               + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  190 VLPELNGKLTGMAFRVPTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 297          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLPAL GKL G+A RVPTP+           K    +E+ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RV+DL
Sbjct:  225 VLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDL 332          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP LKGKL G+A RVPTP+          +K T  +E+ AA +++++  L GIL   DE +VS DF+               +  +  KV+AWYDNEWGYS RVVDL
Sbjct:  223 VLPELKGKLTGMAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDL 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 325
            VLP LKGKL G+A RVPTP+          +K T  +E+ AA +++++  L GIL   DE +VS DF+               +  +  KV+AWYDNEWGYS RVVDL
Sbjct:  223 VLPELKGKLTGMAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDL 330          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.144e-19
Identity = 49/113 (43.36%), Postives = 64/113 (56.64%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP LKGKL G+A RVPT +           K T  E++  A +E+++ E+KG+L+  DE +VS DF                +    VK++AWYDNEWGYS RVVDLA  VA
Sbjct:  222 VLPELKGKLTGMAFRVPTNDVSVVDLTVTLEKATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVA 334          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 48/115 (41.74%), Postives = 63/115 (54.78%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 346
            V+P LKGKL+G ALRVP P            K    E++NAAF+ +A+  LKGIL   D P+VS D                 + D+  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  225 VMPNLKGKLDGYALRVPIPTGSVTDLTAELKKPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DNQAKVVSWYDNEWGYSNRLVDLVALVGKS 338          
BLAST of CX300193 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 2
Query:    2 VLPALKGKLNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 340
            VLP L GKL G+A RVPT +           K     E+NAA +E+++ ELKGIL   ++ +VS DFR               +  +  KV++WYDNEWGYS +V ++A ++A
Sbjct:  219 VLPVLNGKLTGMAFRVPTSDVSVVDLTVVLEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEMARVIA 331          
The following BLAST results are available for this feature:
BLAST of CX300193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
G3P_MYCBO1.617e-1942.61Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_THEMA2.112e-1941.96Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P2_STAEQ3.602e-1945.45Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3PC_HORVU4.704e-1943.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI4.704e-1941.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_ANAVT4.704e-1943.52Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP4.704e-1943.52Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3PC_CHLRE6.144e-1943.36Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MYCAV1.369e-1841.74Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_BACFR1.369e-1838.94Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]

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Properties
Property NameValue
Genbank descriptionC07007C09SK SaltLeaf1 Citrus clementina cDNA clone C07007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300193 ID=CX300193; Name=CX300193; organism=Citrus clementina; type=EST; length=430bp
TGTCCTCCCAGCACTCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGC
CAACACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAA
ACCTTCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGA
ACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACT
TCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTC
ATGGGAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGG
TTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGA
AGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATG
TTCTTGTTTTTCATTTTTGGTTCCCCCATT
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