CX300195

Overview
NameCX300195
Unique NameCX300195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12170 contig Ccv1_Contig12170:1199..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_RAT (Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_PONAB (Tubulin beta chain OS=Pongo abelii GN=TUBB PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_PIG (Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_PANTR (Tubulin beta chain OS=Pan troglodytes GN=TUBB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_MOUSE (Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_MACMU (Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_HUMAN (Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_CRIGR (Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB4_XENLA (Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CX300195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB5_RAT1.052e-2491.23Tubulin beta-5 chain OS=Rattus norvegicus GN=Tubb5... [more]
TBB5_PONAB1.052e-2491.23Tubulin beta chain OS=Pongo abelii GN=TUBB PE=2 SV... [more]
TBB5_PIG1.052e-2491.23Tubulin beta chain OS=Sus scrofa GN=TUBB PE=2 SV=1[more]
TBB5_PANTR1.052e-2491.23Tubulin beta chain OS=Pan troglodytes GN=TUBB PE=3... [more]
TBB5_MOUSE1.052e-2491.23Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1... [more]
TBB5_MACMU1.052e-2491.23Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 ... [more]
TBB5_HUMAN1.052e-2491.23Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV... [more]
TBB5_CRIGR1.052e-2491.23Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB... [more]
TBB5_BOVIN1.052e-2491.23Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 S... [more]
TBB4_XENLA1.052e-2489.47Tubulin beta-4 chain OS=Xenopus laevis GN=tubb4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC07007C11SK SaltLeaf1 Citrus clementina cDNA clone C07007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300195 ID=CX300195; Name=CX300195; organism=Citrus clementina; type=EST; length=445bp
AGATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTC
AGGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTT
GCATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAG
AGAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCA
ACAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGA
GGGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTT
GATGAGACCAACCCCCTTGTACTGTGGCTTCTTTTGTTGGTGATTACAAT
TTCTGTCTTTTAAGACGATATTGTTCGTTGTTCTTTTCGAGCATTCGAAT
AAAGAATTGCTAGTTTGATCACCTTTAAAAAAAAAAAAAAAAAAC
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