CX300195 | Citrus Genome Database

Overview


Name	CX300195
Unique Name	CX300195
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	445

Libraries


Library Name	Type
SaltLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig12170	contig	Ccv1_Contig12170:1199..1643.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_XENLA (Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2C_RAT (Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2C_MOUSE (Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2C_HUMAN (Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2C_BOVIN (Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2B_MOUSE (Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

[Close]

BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2B_HUMAN (Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.052e-24
Identity = 51/57 (89.47%), Postives = 57/57 (100.00%), Query Frame = 3

Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419

The following BLAST results are available for this feature:

BLAST of CX300195 vs. ExPASy Swiss-Prot

BLAST of CX300195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
TBB3_CHICK	1.052e-24	89.47	Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1	[more]
TBB2_XENLA	1.052e-24	89.47	Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE...	[more]
TBB2_CHICK	1.052e-24	89.47	Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1	[more]
TBB2C_RAT	1.052e-24	89.47	Tubulin beta-2C chain OS=Rattus norvegicus GN=Tubb...	[more]
TBB2C_MOUSE	1.052e-24	89.47	Tubulin beta-2C chain OS=Mus musculus GN=Tubb2c PE...	[more]
TBB2C_HUMAN	1.052e-24	89.47	Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE...	[more]
TBB2C_BOVIN	1.052e-24	89.47	Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2...	[more]
TBB2B_RAT	1.052e-24	89.47	Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb...	[more]
TBB2B_MOUSE	1.052e-24	89.47	Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE...	[more]
TBB2B_HUMAN	1.052e-24	89.47	Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	C07007C11SK SaltLeaf1 Citrus clementina cDNA clone C07007C11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300195 ID=CX300195; Name=CX300195; organism=Citrus clementina; type=EST; length=445bp
AGATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTC
AGGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTT
GCATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAG
AGAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCA
ACAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGA
GGGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTT
GATGAGACCAACCCCCTTGTACTGTGGCTTCTTTTGTTGGTGATTACAAT
TTCTGTCTTTTAAGACGATATTGTTCGTTGTTCTTTTCGAGCATTCGAAT
AAAGAATTGCTAGTTTGATCACCTTTAAAAAAAAAAAAAAAAAAC