CX300195

Overview
NameCX300195
Unique NameCX300195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_PNECA (Tubulin beta chain OS=Pneumocystis carinii GN=TUB-B PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.060e-24
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STFIGNSTSIQE+F+RV +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFIGNSTSIQELFKRVGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB3_DROME (Tubulin beta-3 chain OS=Drosophila melanogaster GN=betaTub60D PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.060e-24
Identity = 50/57 (87.72%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  369 MSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 425          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.060e-24
Identity = 50/57 (87.72%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STF+GN+T+IQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFVGNATAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_PHANO (Tubulin beta chain OS=Phaeosphaeria nodorum GN=tubA PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.996e-24
Identity = 49/57 (85.96%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TF+GNSTSIQE+F+R+ +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFVGNSTSIQELFKRIGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_MYCGR (Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.996e-24
Identity = 50/57 (87.72%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STF+GNSTSIQE+F+RV +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFVGNSTSIQELFKRVGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_EMENI (Tubulin beta-2 chain OS=Emericella nidulans GN=tubC PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.996e-24
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA+TF+GNSTS+QE+F RVS QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+
Sbjct:  363 MAATFVGNSTSVQELFNRVSNQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLM 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_PENDI (Tubulin beta chain OS=Penicillium digitatum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.219e-24
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STF+GNSTSIQE+F+RV +QF AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFVGNSTSIQELFKRVGDQFAAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 5.219e-24
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA+TFIGNST IQE+F+RV EQF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAATFIGNSTCIQELFKRVGEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA TFIGN+T IQEMFRRV EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MAVTFIGNNTCIQEMFRRVGEQFTLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_RHYSE (Tubulin beta chain OS=Rhynchosporium secalis PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 49/57 (85.96%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STF+GNSTSIQE+F+R+ +QFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSSTFVGNSTSIQELFKRIGDQFTRMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
The following BLAST results are available for this feature:
BLAST of CX300195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB_PNECA3.060e-2489.47Tubulin beta chain OS=Pneumocystis carinii GN=TUB-... [more]
TBB3_DROME3.060e-2487.72Tubulin beta-3 chain OS=Drosophila melanogaster GN... [more]
TBB2_COLGL3.060e-2487.72Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB_PHANO3.996e-2485.96Tubulin beta chain OS=Phaeosphaeria nodorum GN=tub... [more]
TBB_MYCGR3.996e-2487.72Tubulin beta chain OS=Mycosphaerella graminicola G... [more]
TBB2_EMENI3.996e-2487.72Tubulin beta-2 chain OS=Emericella nidulans GN=tub... [more]
TBB_PENDI5.219e-2487.72Tubulin beta chain OS=Penicillium digitatum GN=TUB... [more]
TBB_GIALA5.219e-2489.47Tubulin beta chain OS=Giardia lamblia PE=2 SV=3[more]
TBB_TRYBR6.816e-2491.23Tubulin beta chain OS=Trypanosoma brucei rhodesien... [more]
TBB_RHYSE6.816e-2485.96Tubulin beta chain OS=Rhynchosporium secalis PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC07007C11SK SaltLeaf1 Citrus clementina cDNA clone C07007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300195 ID=CX300195; Name=CX300195; organism=Citrus clementina; type=EST; length=445bp
AGATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTC
AGGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTT
GCATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAG
AGAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCA
ACAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGA
GGGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTT
GATGAGACCAACCCCCTTGTACTGTGGCTTCTTTTGTTGGTGATTACAAT
TTCTGTCTTTTAAGACGATATTGTTCGTTGTTCTTTTCGAGCATTCGAAT
AAAGAATTGCTAGTTTGATCACCTTTAAAAAAAAAAAAAAAAAAC
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