CX300195

Overview
NameCX300195
Unique NameCX300195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 49/57 (85.96%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STF+GNST+IQEMF+RV EQFTAM++RKAFLHWYTGEGMD+MEFTEAESNMNDLV
Sbjct:  363 MSSTFVGNSTAIQEMFKRVGEQFTAMYKRKAFLHWYTGEGMDDMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++ FIGNST+IQEMF+R+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  338 MSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 394          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.816e-24
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+ TF+GNST+IQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSFTFVGNSTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 8.902e-24
Identity = 50/57 (87.72%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNSTSIQE+FRR+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB6_BOVIN (Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.902e-24
Identity = 49/57 (85.96%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNST+IQE+F+R+SEQF+AMFRRKAFLHW+TGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVE (Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            ++STF+GNST+IQE+FRRV EQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  363 ISSTFVGNSTAIQEIFRRVGEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STF+GNSTSIQEMFRRVSEQFT MF+RKAFLHWYTGEGMDEMEFTE  +NMNDLV
Sbjct:  363 MSSTFMGNSTSIQEMFRRVSEQFTVMFKRKAFLHWYTGEGMDEMEFTEVRANMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_ASPFU (Tubulin beta chain OS=Aspergillus fumigatus GN=AFUA_7G00250 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.983e-23
Identity = 48/57 (84.21%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TF+GNSTS+QE+F+RV+ QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+
Sbjct:  363 MSATFVGNSTSVQELFQRVATQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLM 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.590e-23
Identity = 49/57 (85.96%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STF+ NST+IQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  364 MSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 420          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.590e-23
Identity = 48/57 (84.21%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TF+GN+T+IQE+++RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
The following BLAST results are available for this feature:
BLAST of CX300195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB3_OOMCK6.816e-2485.96Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB2_OOMCK6.816e-2487.72Tubulin beta-2 chain (Fragment) OS=Oomycete-like s... [more]
TBB2_COLGR6.816e-2487.72Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB_SCHPO8.902e-2487.72Tubulin beta chain OS=Schizosaccharomyces pombe GN... [more]
TBB6_BOVIN8.902e-2485.96Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 S... [more]
TBB1_TRIVE1.163e-2387.72Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV... [more]
TBB1_SOYBN1.163e-2387.72Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB_ASPFU1.983e-2384.21Tubulin beta chain OS=Aspergillus fumigatus GN=AFU... [more]
TBB_AJECA2.590e-2385.96Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBB6_ECTVR2.590e-2384.21Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]

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Properties
Property NameValue
Genbank descriptionC07007C11SK SaltLeaf1 Citrus clementina cDNA clone C07007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300195 ID=CX300195; Name=CX300195; organism=Citrus clementina; type=EST; length=445bp
AGATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTC
AGGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTT
GCATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAG
AGAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCA
ACAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGA
GGGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTT
GATGAGACCAACCCCCTTGTACTGTGGCTTCTTTTGTTGGTGATTACAAT
TTCTGTCTTTTAAGACGATATTGTTCGTTGTTCTTTTCGAGCATTCGAAT
AAAGAATTGCTAGTTTGATCACCTTTAAAAAAAAAAAAAAAAAAC
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