CX300195

Overview
NameCX300195
Unique NameCX300195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_CANAL (Tubulin beta chain OS=Candida albicans GN=TUB2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.383e-23
Identity = 49/57 (85.96%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TFIGNSTSIQE+F+RV +QF+AMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  363 MSATFIGNSTSIQELFKRVGDQFSAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB1_ECHMU (Tubulin beta-1 chain OS=Echinococcus multilocularis GN=TUB-1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.383e-23
Identity = 49/57 (85.96%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+ TF+GN+T+IQE+F+RVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSVTFMGNTTAIQEIFKRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+ TFIGN+T IQEMFRRV EQFT MFRRK FLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  365 MSVTFIGNNTCIQEMFRRVGEQFTGMFRRKRFLHWYTGEGMDEMEFTEAESNMNDLV 421          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 46/57 (80.70%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TF+GN+TSIQE+F+R+S+QFT MFRRKAFLHWYTGEGMDEMEF+EAESNMNDL+
Sbjct:  363 MSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNMNDLL 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_ENCHE (Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 46/57 (80.70%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TF+GN+TSIQE+F+R+S+QFT MFRRKAFLHWYTGEGMDEMEF+EAESNMNDL+
Sbjct:  363 MSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNMNDLL 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 46/57 (80.70%), Postives = 56/57 (98.25%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TF+GN+TSIQE+F+R+S+QFT MFRRKAFLHWYTGEGMDEMEF+EAESNMNDL+
Sbjct:  363 MSATFVGNTTSIQELFKRISDQFTVMFRRKAFLHWYTGEGMDEMEFSEAESNMNDLL 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 47/57 (82.46%), Postives = 57/57 (100.00%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M++TF+GN+T+IQE+++RV+EQFT+MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MSTTFVGNTTAIQEVWKRVAEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_TRIRU (Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.536e-23
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+STF+GNSTSIQE+F+RV +QFTAMFR+KAFL WYTGEGMDEMEFTEAE+NMNDLV
Sbjct:  363 MSSTFVGNSTSIQELFKRVGDQFTAMFRKKAFLFWYTGEGMDEMEFTEAENNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_THAWE (Tubulin beta chain OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.536e-23
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            MA+TF+GN+T++QE ++RV+EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  363 MATTFVGNTTAVQETWKRVAEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of CX300195 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.843e-23
Identity = 48/57 (84.21%), Postives = 55/57 (96.49%), Query Frame = 3
Query:    3 MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 173
            M+ TFIGNST+IQ++F+RV++QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM DLV
Sbjct:  363 MSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLV 419          
The following BLAST results are available for this feature:
BLAST of CX300195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB_CANAL3.383e-2385.96Tubulin beta chain OS=Candida albicans GN=TUB2 PE=... [more]
TBB1_ECHMU3.383e-2385.96Tubulin beta-1 chain OS=Echinococcus multiloculari... [more]
TBB_LEIME4.418e-2387.72Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB_ENCIN5.770e-2380.70Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB_ENCHE5.770e-2380.70Tubulin beta chain OS=Encephalitozoon hellem GN=TU... [more]
TBB_ENCCU5.770e-2380.70Tubulin beta chain OS=Encephalitozoon cuniculi GN=... [more]
TBB5_ECTVR5.770e-2382.46Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]
TBB_TRIRU7.536e-2384.21Tubulin beta chain OS=Trichophyton rubrum PE=2 SV=... [more]
TBB_THAWE7.536e-2382.46Tubulin beta chain OS=Thalassiosira weissflogii PE... [more]
TBB_UROFA9.843e-2384.21Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC07007C11SK SaltLeaf1 Citrus clementina cDNA clone C07007C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300195 ID=CX300195; Name=CX300195; organism=Citrus clementina; type=EST; length=445bp
AGATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTC
AGGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTT
GCATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAG
AGAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCA
ACAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGA
GGGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTT
GATGAGACCAACCCCCTTGTACTGTGGCTTCTTTTGTTGGTGATTACAAT
TTCTGTCTTTTAAGACGATATTGTTCGTTGTTCTTTTCGAGCATTCGAAT
AAAGAATTGCTAGTTTGATCACCTTTAAAAAAAAAAAAAAAAAAC
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